miRNA display CGI


Results 1 - 20 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31239 3' -68 NC_006560.1 + 5196 0.66 0.447242
Target:  5'- gCCCCgacGGCGGGGacaGCGCccGGGCCgucuccuccaccaugGCGGc -3'
miRNA:   3'- -GGGGa--CCGCCCC---CGCG--CUCGGg--------------CGCC- -5'
31239 3' -68 NC_006560.1 + 99862 0.66 0.446411
Target:  5'- cUCCCgucGCcgGGGGGCGCGgGGgUCGUGGc -3'
miRNA:   3'- -GGGGac-CG--CCCCCGCGC-UCgGGCGCC- -5'
31239 3' -68 NC_006560.1 + 14024 0.66 0.446411
Target:  5'- gCCC-GGCGGacgGGGuCGCGucggGGUCaCGCGGa -3'
miRNA:   3'- gGGGaCCGCC---CCC-GCGC----UCGG-GCGCC- -5'
31239 3' -68 NC_006560.1 + 56002 0.66 0.446411
Target:  5'- aCCCCUGGguCGcGcGCGUGAGCUCGUGc -3'
miRNA:   3'- -GGGGACC--GCcCcCGCGCUCGGGCGCc -5'
31239 3' -68 NC_006560.1 + 10283 0.66 0.446411
Target:  5'- cCCCCUccgcgagagggGGCGGGccgccGGggaccgccgcCGCGA-CCCGCGGc -3'
miRNA:   3'- -GGGGA-----------CCGCCC-----CC----------GCGCUcGGGCGCC- -5'
31239 3' -68 NC_006560.1 + 12765 0.66 0.446411
Target:  5'- gCCaguugGGCGGcagcuGGGC-CGAGaCCGCGGg -3'
miRNA:   3'- gGGga---CCGCC-----CCCGcGCUCgGGCGCC- -5'
31239 3' -68 NC_006560.1 + 146290 0.66 0.446411
Target:  5'- aCgCC--GCGGGGGCGCG-GUCgGCGu -3'
miRNA:   3'- -GgGGacCGCCCCCGCGCuCGGgCGCc -5'
31239 3' -68 NC_006560.1 + 107454 0.66 0.446411
Target:  5'- gCCCCUcgcgaccgucGGCccGGGGGCGCucGCcgccuCCGCGc -3'
miRNA:   3'- -GGGGA----------CCG--CCCCCGCGcuCG-----GGCGCc -5'
31239 3' -68 NC_006560.1 + 68193 0.66 0.446411
Target:  5'- uCCgCgUGGCGGacGCGCGcGCCCaGUGGc -3'
miRNA:   3'- -GG-GgACCGCCccCGCGCuCGGG-CGCC- -5'
31239 3' -68 NC_006560.1 + 138494 0.66 0.446411
Target:  5'- cCCCCgagGGCGaggccGGGGCGCc-GCCC-CGu -3'
miRNA:   3'- -GGGGa--CCGC-----CCCCGCGcuCGGGcGCc -5'
31239 3' -68 NC_006560.1 + 145207 0.66 0.446411
Target:  5'- aCCCCUGG-GGcccccccuuccugcuGGCGCcccggggGAGCCCGCa- -3'
miRNA:   3'- -GGGGACCgCCc--------------CCGCG-------CUCGGGCGcc -5'
31239 3' -68 NC_006560.1 + 137083 0.66 0.445581
Target:  5'- cCUCCUGcGCccGGGGCuggacgcggccaaGCGGGCCCG-GGc -3'
miRNA:   3'- -GGGGAC-CGc-CCCCG-------------CGCUCGGGCgCC- -5'
31239 3' -68 NC_006560.1 + 118306 0.66 0.445581
Target:  5'- gCCCUGGCGcaccaGGcGGCcgccgugGCGgcGGCCgGCGGn -3'
miRNA:   3'- gGGGACCGC-----CC-CCG-------CGC--UCGGgCGCC- -5'
31239 3' -68 NC_006560.1 + 81519 0.66 0.445581
Target:  5'- gCCCUcugggugcggUGGCGGcgcgccaGGGCGUGcucGGCCgCGCGa -3'
miRNA:   3'- -GGGG----------ACCGCC-------CCCGCGC---UCGG-GCGCc -5'
31239 3' -68 NC_006560.1 + 3737 0.66 0.441445
Target:  5'- -gCCaGGCGcGcGGGCGCGGcgcgggcgcggcggcGCCgCGCGGc -3'
miRNA:   3'- ggGGaCCGC-C-CCCGCGCU---------------CGG-GCGCC- -5'
31239 3' -68 NC_006560.1 + 27825 0.66 0.438152
Target:  5'- gCCCUuccgcGGcCGGGGGUGCcggGGGUgCCGgGGg -3'
miRNA:   3'- gGGGA-----CC-GCCCCCGCG---CUCG-GGCgCC- -5'
31239 3' -68 NC_006560.1 + 131326 0.66 0.438152
Target:  5'- gCCCUGuGCGGccucGGCcuCGAGCcCCGCGc -3'
miRNA:   3'- gGGGAC-CGCCc---CCGc-GCUCG-GGCGCc -5'
31239 3' -68 NC_006560.1 + 121922 0.66 0.438152
Target:  5'- gCCCCgcgGGaUGGaccgcGGGCcCGGGCgCGCGGc -3'
miRNA:   3'- -GGGGa--CC-GCC-----CCCGcGCUCGgGCGCC- -5'
31239 3' -68 NC_006560.1 + 119514 0.66 0.438152
Target:  5'- cCUCCgggccGCGGGGccgcgcgcuaaGCGCGc-CCCGCGGg -3'
miRNA:   3'- -GGGGac---CGCCCC-----------CGCGCucGGGCGCC- -5'
31239 3' -68 NC_006560.1 + 38074 0.66 0.438152
Target:  5'- -gCCgGGCcccGGGGGUGUGucGGUgCCGCGGg -3'
miRNA:   3'- ggGGaCCG---CCCCCGCGC--UCG-GGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.