miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31239 5' -55.8 NC_006560.1 + 112958 0.66 0.925036
Target:  5'- gCGCCGCGcGGAgcUCgACGgUCACCgGgACu -3'
miRNA:   3'- -GCGGCGC-CCU--AGaUGC-AGUGGaUgUG- -5'
31239 5' -55.8 NC_006560.1 + 106650 0.66 0.925036
Target:  5'- cCGCCGagcggGGGGUCgcgcCGUCGCCcgaGCa -3'
miRNA:   3'- -GCGGCg----CCCUAGau--GCAGUGGaugUG- -5'
31239 5' -55.8 NC_006560.1 + 91555 0.66 0.925036
Target:  5'- aCGCCgGCGGGccCUGCccgCugCUGCAg -3'
miRNA:   3'- -GCGG-CGCCCuaGAUGca-GugGAUGUg -5'
31239 5' -55.8 NC_006560.1 + 75500 0.66 0.925036
Target:  5'- uCGaCGCGGucGAgCUGCGcCGCCUGCAg -3'
miRNA:   3'- -GCgGCGCC--CUaGAUGCaGUGGAUGUg -5'
31239 5' -55.8 NC_006560.1 + 50811 0.66 0.925036
Target:  5'- gGCCGCGaacGGccgccUgUGCGgcgagCGCCUGCACg -3'
miRNA:   3'- gCGGCGC---CCu----AgAUGCa----GUGGAUGUG- -5'
31239 5' -55.8 NC_006560.1 + 66858 0.66 0.925036
Target:  5'- gGCCGCGGcAUC--CGUCccGCCcGCACg -3'
miRNA:   3'- gCGGCGCCcUAGauGCAG--UGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 134260 0.66 0.923409
Target:  5'- cCGCCcgaagccgggcaggGCGGGGUCgacCGUCGCCg---- -3'
miRNA:   3'- -GCGG--------------CGCCCUAGau-GCAGUGGaugug -5'
31239 5' -55.8 NC_006560.1 + 10680 0.66 0.92009
Target:  5'- gCGCCccGCGGGAaggUCgaagaacaccacguCGUCGCCgGCGCu -3'
miRNA:   3'- -GCGG--CGCCCU---AGau------------GCAGUGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 119520 0.66 0.919529
Target:  5'- gGCCGCGGGG-CcGCG-CGCUaaGCGCg -3'
miRNA:   3'- gCGGCGCCCUaGaUGCaGUGGa-UGUG- -5'
31239 5' -55.8 NC_006560.1 + 33786 0.66 0.919529
Target:  5'- gGCCGUGGGGcgcgCgaaGUCGCggGCGCg -3'
miRNA:   3'- gCGGCGCCCUa---GaugCAGUGgaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 129896 0.66 0.919529
Target:  5'- gCGcCCGCGuGGGg--GCGgUGCCUGCGCa -3'
miRNA:   3'- -GC-GGCGC-CCUagaUGCaGUGGAUGUG- -5'
31239 5' -55.8 NC_006560.1 + 42573 0.66 0.919529
Target:  5'- cCGCCGCGGcGG-CcACGUCcgccGCCgagagACGCg -3'
miRNA:   3'- -GCGGCGCC-CUaGaUGCAG----UGGa----UGUG- -5'
31239 5' -55.8 NC_006560.1 + 3752 0.66 0.919529
Target:  5'- gCGgCGCGGGcgCgGCGgCGCC-GCGCg -3'
miRNA:   3'- -GCgGCGCCCuaGaUGCaGUGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 61635 0.66 0.919529
Target:  5'- cCGCCGCGuccaGGAUCcgGCuGUCgGCCgGCGCc -3'
miRNA:   3'- -GCGGCGC----CCUAGa-UG-CAG-UGGaUGUG- -5'
31239 5' -55.8 NC_006560.1 + 117800 0.66 0.919529
Target:  5'- aCGcCCGCGGcgcCUACGaCcCCUACGCg -3'
miRNA:   3'- -GC-GGCGCCcuaGAUGCaGuGGAUGUG- -5'
31239 5' -55.8 NC_006560.1 + 46003 0.66 0.919529
Target:  5'- gGCCGuCGGGggC-GCGUgCACCaccGCGCa -3'
miRNA:   3'- gCGGC-GCCCuaGaUGCA-GUGGa--UGUG- -5'
31239 5' -55.8 NC_006560.1 + 74798 0.66 0.918965
Target:  5'- gCGCUGCGGGAcCUguuccccGCGgCGCCcgagACGCc -3'
miRNA:   3'- -GCGGCGCCCUaGA-------UGCaGUGGa---UGUG- -5'
31239 5' -55.8 NC_006560.1 + 76060 0.66 0.918965
Target:  5'- cCGCCGCGGcGGaacugguUCgcaccgGCGUCGCCcugGCGu -3'
miRNA:   3'- -GCGGCGCC-CU-------AGa-----UGCAGUGGa--UGUg -5'
31239 5' -55.8 NC_006560.1 + 115279 0.66 0.913784
Target:  5'- aCGCaCGCGGGcaccGCGa-GCCUGCGCa -3'
miRNA:   3'- -GCG-GCGCCCuagaUGCagUGGAUGUG- -5'
31239 5' -55.8 NC_006560.1 + 86775 0.66 0.913784
Target:  5'- cCGaCGUGGGGUCga-G-CACCUugGCg -3'
miRNA:   3'- -GCgGCGCCCUAGaugCaGUGGAugUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.