miRNA display CGI


Results 1 - 20 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31244 5' -67.8 NC_006560.1 + 22004 0.66 0.443014
Target:  5'- cGGCGGCgCGGgCUCGCCgGacCCGGAc -3'
miRNA:   3'- -CCGCUGaGCCgGGGCGGgCccGGCCU- -5'
31244 5' -67.8 NC_006560.1 + 18426 0.66 0.443014
Target:  5'- uGCGACcCGGCCgCCGC---GGCCGGc -3'
miRNA:   3'- cCGCUGaGCCGG-GGCGggcCCGGCCu -5'
31244 5' -67.8 NC_006560.1 + 83362 0.66 0.443014
Target:  5'- cGGCGGCccggGGCCCCaGCCCucccuGGCCa-- -3'
miRNA:   3'- -CCGCUGag--CCGGGG-CGGGc----CCGGccu -5'
31244 5' -67.8 NC_006560.1 + 90705 0.66 0.443014
Target:  5'- cGGCaccaACUCGGCCCUGCacaugaCCGaGGUCGa- -3'
miRNA:   3'- -CCGc---UGAGCCGGGGCG------GGC-CCGGCcu -5'
31244 5' -67.8 NC_006560.1 + 57668 0.66 0.443014
Target:  5'- gGGCGGCgaggCGcGCCCgccgCGCgUGGGUgGGGg -3'
miRNA:   3'- -CCGCUGa---GC-CGGG----GCGgGCCCGgCCU- -5'
31244 5' -67.8 NC_006560.1 + 3905 0.66 0.443014
Target:  5'- cGGCGGCgUCGGCgucccccuccUCCGCCgCGgGGgCGGc -3'
miRNA:   3'- -CCGCUG-AGCCG----------GGGCGG-GC-CCgGCCu -5'
31244 5' -67.8 NC_006560.1 + 135217 0.66 0.443014
Target:  5'- uGGCGGgucgCGGCCUCG-CUGGaCCGGAc -3'
miRNA:   3'- -CCGCUga--GCCGGGGCgGGCCcGGCCU- -5'
31244 5' -67.8 NC_006560.1 + 43869 0.66 0.443014
Target:  5'- cGGCGccaGCggGGCCCCGCgacCCaGGGCCu-- -3'
miRNA:   3'- -CCGC---UGagCCGGGGCG---GG-CCCGGccu -5'
31244 5' -67.8 NC_006560.1 + 114194 0.66 0.443014
Target:  5'- cGGCugGGCcCGGCCCaGCCCcuGCCGGu -3'
miRNA:   3'- -CCG--CUGaGCCGGGgCGGGccCGGCCu -5'
31244 5' -67.8 NC_006560.1 + 22582 0.66 0.443014
Target:  5'- -cCGACUCGGaCCCCGacCCCGacucGGacCCGGAc -3'
miRNA:   3'- ccGCUGAGCC-GGGGC--GGGC----CC--GGCCU- -5'
31244 5' -67.8 NC_006560.1 + 114121 0.66 0.443014
Target:  5'- gGGCcGCggGGCCCCGCCguugcucgacaaCGcGGCCGcGGu -3'
miRNA:   3'- -CCGcUGagCCGGGGCGG------------GC-CCGGC-CU- -5'
31244 5' -67.8 NC_006560.1 + 54322 0.66 0.440527
Target:  5'- cGCGugUgucuguuuauugccCGGCUcgCCGUCCGGGUgGGGu -3'
miRNA:   3'- cCGCugA--------------GCCGG--GGCGGGCCCGgCCU- -5'
31244 5' -67.8 NC_006560.1 + 6321 0.66 0.438873
Target:  5'- aGGCGACcggggacgccgcgCGggcGCCCCGCCCcggcccgcccuucGGGgCGGGc -3'
miRNA:   3'- -CCGCUGa------------GC---CGGGGCGGG-------------CCCgGCCU- -5'
31244 5' -67.8 NC_006560.1 + 117731 0.66 0.434754
Target:  5'- gGGCGGCcCGGCCUCcucccgcgcgaGCCCaGcCCGGGg -3'
miRNA:   3'- -CCGCUGaGCCGGGG-----------CGGGcCcGGCCU- -5'
31244 5' -67.8 NC_006560.1 + 1490 0.66 0.434754
Target:  5'- aGGCG-CgCGGCCCaCGCC--GGCgGGAg -3'
miRNA:   3'- -CCGCuGaGCCGGG-GCGGgcCCGgCCU- -5'
31244 5' -67.8 NC_006560.1 + 65028 0.66 0.434754
Target:  5'- --gGACUgaCGGCCCgGagCgGGGCCGGGc -3'
miRNA:   3'- ccgCUGA--GCCGGGgCg-GgCCCGGCCU- -5'
31244 5' -67.8 NC_006560.1 + 133666 0.66 0.434754
Target:  5'- cGCcGCUgGGCCCggugaugagcgCGCCCGGGauGGGc -3'
miRNA:   3'- cCGcUGAgCCGGG-----------GCGGGCCCggCCU- -5'
31244 5' -67.8 NC_006560.1 + 131439 0.66 0.434754
Target:  5'- cGCGGCgcuGGCCCUGgCCGaGGCgCGaGAg -3'
miRNA:   3'- cCGCUGag-CCGGGGCgGGC-CCG-GC-CU- -5'
31244 5' -67.8 NC_006560.1 + 74487 0.66 0.434754
Target:  5'- aGGCGcGCgcgCGcGCCgaggCgGCCCGGGCCGc- -3'
miRNA:   3'- -CCGC-UGa--GC-CGG----GgCGGGCCCGGCcu -5'
31244 5' -67.8 NC_006560.1 + 145500 0.66 0.434754
Target:  5'- gGGgGGCUCuGUCCCcugcucuCCCGGGCgGGc -3'
miRNA:   3'- -CCgCUGAGcCGGGGc------GGGCCCGgCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.