Results 1 - 20 of 363 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31244 | 5' | -67.8 | NC_006560.1 | + | 22004 | 0.66 | 0.443014 |
Target: 5'- cGGCGGCgCGGgCUCGCCgGacCCGGAc -3' miRNA: 3'- -CCGCUGaGCCgGGGCGGgCccGGCCU- -5' |
|||||||
31244 | 5' | -67.8 | NC_006560.1 | + | 18426 | 0.66 | 0.443014 |
Target: 5'- uGCGACcCGGCCgCCGC---GGCCGGc -3' miRNA: 3'- cCGCUGaGCCGG-GGCGggcCCGGCCu -5' |
|||||||
31244 | 5' | -67.8 | NC_006560.1 | + | 83362 | 0.66 | 0.443014 |
Target: 5'- cGGCGGCccggGGCCCCaGCCCucccuGGCCa-- -3' miRNA: 3'- -CCGCUGag--CCGGGG-CGGGc----CCGGccu -5' |
|||||||
31244 | 5' | -67.8 | NC_006560.1 | + | 90705 | 0.66 | 0.443014 |
Target: 5'- cGGCaccaACUCGGCCCUGCacaugaCCGaGGUCGa- -3' miRNA: 3'- -CCGc---UGAGCCGGGGCG------GGC-CCGGCcu -5' |
|||||||
31244 | 5' | -67.8 | NC_006560.1 | + | 57668 | 0.66 | 0.443014 |
Target: 5'- gGGCGGCgaggCGcGCCCgccgCGCgUGGGUgGGGg -3' miRNA: 3'- -CCGCUGa---GC-CGGG----GCGgGCCCGgCCU- -5' |
|||||||
31244 | 5' | -67.8 | NC_006560.1 | + | 3905 | 0.66 | 0.443014 |
Target: 5'- cGGCGGCgUCGGCgucccccuccUCCGCCgCGgGGgCGGc -3' miRNA: 3'- -CCGCUG-AGCCG----------GGGCGG-GC-CCgGCCu -5' |
|||||||
31244 | 5' | -67.8 | NC_006560.1 | + | 135217 | 0.66 | 0.443014 |
Target: 5'- uGGCGGgucgCGGCCUCG-CUGGaCCGGAc -3' miRNA: 3'- -CCGCUga--GCCGGGGCgGGCCcGGCCU- -5' |
|||||||
31244 | 5' | -67.8 | NC_006560.1 | + | 43869 | 0.66 | 0.443014 |
Target: 5'- cGGCGccaGCggGGCCCCGCgacCCaGGGCCu-- -3' miRNA: 3'- -CCGC---UGagCCGGGGCG---GG-CCCGGccu -5' |
|||||||
31244 | 5' | -67.8 | NC_006560.1 | + | 114194 | 0.66 | 0.443014 |
Target: 5'- cGGCugGGCcCGGCCCaGCCCcuGCCGGu -3' miRNA: 3'- -CCG--CUGaGCCGGGgCGGGccCGGCCu -5' |
|||||||
31244 | 5' | -67.8 | NC_006560.1 | + | 22582 | 0.66 | 0.443014 |
Target: 5'- -cCGACUCGGaCCCCGacCCCGacucGGacCCGGAc -3' miRNA: 3'- ccGCUGAGCC-GGGGC--GGGC----CC--GGCCU- -5' |
|||||||
31244 | 5' | -67.8 | NC_006560.1 | + | 114121 | 0.66 | 0.443014 |
Target: 5'- gGGCcGCggGGCCCCGCCguugcucgacaaCGcGGCCGcGGu -3' miRNA: 3'- -CCGcUGagCCGGGGCGG------------GC-CCGGC-CU- -5' |
|||||||
31244 | 5' | -67.8 | NC_006560.1 | + | 54322 | 0.66 | 0.440527 |
Target: 5'- cGCGugUgucuguuuauugccCGGCUcgCCGUCCGGGUgGGGu -3' miRNA: 3'- cCGCugA--------------GCCGG--GGCGGGCCCGgCCU- -5' |
|||||||
31244 | 5' | -67.8 | NC_006560.1 | + | 6321 | 0.66 | 0.438873 |
Target: 5'- aGGCGACcggggacgccgcgCGggcGCCCCGCCCcggcccgcccuucGGGgCGGGc -3' miRNA: 3'- -CCGCUGa------------GC---CGGGGCGGG-------------CCCgGCCU- -5' |
|||||||
31244 | 5' | -67.8 | NC_006560.1 | + | 117731 | 0.66 | 0.434754 |
Target: 5'- gGGCGGCcCGGCCUCcucccgcgcgaGCCCaGcCCGGGg -3' miRNA: 3'- -CCGCUGaGCCGGGG-----------CGGGcCcGGCCU- -5' |
|||||||
31244 | 5' | -67.8 | NC_006560.1 | + | 1490 | 0.66 | 0.434754 |
Target: 5'- aGGCG-CgCGGCCCaCGCC--GGCgGGAg -3' miRNA: 3'- -CCGCuGaGCCGGG-GCGGgcCCGgCCU- -5' |
|||||||
31244 | 5' | -67.8 | NC_006560.1 | + | 65028 | 0.66 | 0.434754 |
Target: 5'- --gGACUgaCGGCCCgGagCgGGGCCGGGc -3' miRNA: 3'- ccgCUGA--GCCGGGgCg-GgCCCGGCCU- -5' |
|||||||
31244 | 5' | -67.8 | NC_006560.1 | + | 133666 | 0.66 | 0.434754 |
Target: 5'- cGCcGCUgGGCCCggugaugagcgCGCCCGGGauGGGc -3' miRNA: 3'- cCGcUGAgCCGGG-----------GCGGGCCCggCCU- -5' |
|||||||
31244 | 5' | -67.8 | NC_006560.1 | + | 131439 | 0.66 | 0.434754 |
Target: 5'- cGCGGCgcuGGCCCUGgCCGaGGCgCGaGAg -3' miRNA: 3'- cCGCUGag-CCGGGGCgGGC-CCG-GC-CU- -5' |
|||||||
31244 | 5' | -67.8 | NC_006560.1 | + | 74487 | 0.66 | 0.434754 |
Target: 5'- aGGCGcGCgcgCGcGCCgaggCgGCCCGGGCCGc- -3' miRNA: 3'- -CCGC-UGa--GC-CGG----GgCGGGCCCGGCcu -5' |
|||||||
31244 | 5' | -67.8 | NC_006560.1 | + | 145500 | 0.66 | 0.434754 |
Target: 5'- gGGgGGCUCuGUCCCcugcucuCCCGGGCgGGc -3' miRNA: 3'- -CCgCUGAGcCGGGGc------GGGCCCGgCCu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home