miRNA display CGI


Results 1 - 20 of 769 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31247 5' -65.6 NC_006560.1 + 147495 0.66 0.565142
Target:  5'- gUCGUCGCUGUcCuCGGCGuCGUCG-CCg -3'
miRNA:   3'- -GGCAGCGGCGcG-GCCGCcGCGGCuGG- -5'
31247 5' -65.6 NC_006560.1 + 143189 0.66 0.565142
Target:  5'- cCCGcgCGCCccGUGCCGGCcuccGGaGCCGcgACCc -3'
miRNA:   3'- -GGCa-GCGG--CGCGGCCG----CCgCGGC--UGG- -5'
31247 5' -65.6 NC_006560.1 + 30849 0.66 0.565142
Target:  5'- gCCGggCGCCGC-CCcGCcccGCGCCG-CCg -3'
miRNA:   3'- -GGCa-GCGGCGcGGcCGc--CGCGGCuGG- -5'
31247 5' -65.6 NC_006560.1 + 135982 0.66 0.565142
Target:  5'- cCCGgcgCGCgGUggcgGCCGGgGGCGg-GACCg -3'
miRNA:   3'- -GGCa--GCGgCG----CGGCCgCCGCggCUGG- -5'
31247 5' -65.6 NC_006560.1 + 104066 0.66 0.565142
Target:  5'- gCCGUCGCgccucauauCGgGCCGGagcuGCcccCCGACCa -3'
miRNA:   3'- -GGCAGCG---------GCgCGGCCgc--CGc--GGCUGG- -5'
31247 5' -65.6 NC_006560.1 + 6115 0.66 0.565142
Target:  5'- gCCGcCGCCcucaccGCGCCuGcGCGGCGUCc-CCg -3'
miRNA:   3'- -GGCaGCGG------CGCGG-C-CGCCGCGGcuGG- -5'
31247 5' -65.6 NC_006560.1 + 129096 0.66 0.565142
Target:  5'- gUGUCGCUGCagGCCcG-GGcCGCCGACa -3'
miRNA:   3'- gGCAGCGGCG--CGGcCgCC-GCGGCUGg -5'
31247 5' -65.6 NC_006560.1 + 28543 0.66 0.565142
Target:  5'- cCCGcgCGCCGCcCCuGGgGGCcGCCccgcGCCg -3'
miRNA:   3'- -GGCa-GCGGCGcGG-CCgCCG-CGGc---UGG- -5'
31247 5' -65.6 NC_006560.1 + 5138 0.66 0.565142
Target:  5'- aCCGacUCGCgGCGCgGGgccCGG-GCCGggGCCg -3'
miRNA:   3'- -GGC--AGCGgCGCGgCC---GCCgCGGC--UGG- -5'
31247 5' -65.6 NC_006560.1 + 57900 0.66 0.565142
Target:  5'- gCGUccacCGCCGCGcCCGGCcccaucgucucGCGUCGcCCg -3'
miRNA:   3'- gGCA----GCGGCGC-GGCCGc----------CGCGGCuGG- -5'
31247 5' -65.6 NC_006560.1 + 40039 0.66 0.565142
Target:  5'- gCGUUGUuauaCGCGCgCGGCGGgGCgGGg- -3'
miRNA:   3'- gGCAGCG----GCGCG-GCCGCCgCGgCUgg -5'
31247 5' -65.6 NC_006560.1 + 106733 0.66 0.565142
Target:  5'- uCCGaCGUgGCGgUGGCcacccaCGCCGACCu -3'
miRNA:   3'- -GGCaGCGgCGCgGCCGcc----GCGGCUGG- -5'
31247 5' -65.6 NC_006560.1 + 120513 0.66 0.565142
Target:  5'- -gGUCGCgGgGCagCGG-GGCGCCGAg- -3'
miRNA:   3'- ggCAGCGgCgCG--GCCgCCGCGGCUgg -5'
31247 5' -65.6 NC_006560.1 + 72368 0.66 0.565142
Target:  5'- nCC-UCGCggggGCGCCGcUGGCGCUGcCCg -3'
miRNA:   3'- -GGcAGCGg---CGCGGCcGCCGCGGCuGG- -5'
31247 5' -65.6 NC_006560.1 + 119663 0.66 0.565142
Target:  5'- gCCGaCGCgGaCGCC-GUGGCGuCCGucGCCa -3'
miRNA:   3'- -GGCaGCGgC-GCGGcCGCCGC-GGC--UGG- -5'
31247 5' -65.6 NC_006560.1 + 58095 0.66 0.565142
Target:  5'- gCGUacgcgGCCGCGCCcgacucggGuGCGGCcGCCGAg- -3'
miRNA:   3'- gGCAg----CGGCGCGG--------C-CGCCG-CGGCUgg -5'
31247 5' -65.6 NC_006560.1 + 27529 0.66 0.564216
Target:  5'- gCCGUCGgucucucUCGCGCgCGGCcuuccgugucgcGcGCGCCcGCCg -3'
miRNA:   3'- -GGCAGC-------GGCGCG-GCCG------------C-CGCGGcUGG- -5'
31247 5' -65.6 NC_006560.1 + 58365 0.66 0.559592
Target:  5'- cCCGUCucuuccgcggggggaGCgGCGcCCGcGuCGGCGCCcccgggGGCCg -3'
miRNA:   3'- -GGCAG---------------CGgCGC-GGC-C-GCCGCGG------CUGG- -5'
31247 5' -65.6 NC_006560.1 + 28301 0.66 0.558669
Target:  5'- aCGaugaGCCGCGCucucccuUauaccccgcucggggGGCGGCGCCGcCCg -3'
miRNA:   3'- gGCag--CGGCGCG-------G---------------CCGCCGCGGCuGG- -5'
31247 5' -65.6 NC_006560.1 + 149142 0.66 0.556823
Target:  5'- uCCGcCGCgGCGCggggcggcccccaggGGCGGCGCgCGgggaGCCc -3'
miRNA:   3'- -GGCaGCGgCGCGg--------------CCGCCGCG-GC----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.