miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31249 5' -57.7 NC_006560.1 + 6733 0.66 0.854696
Target:  5'- gGGCuCGGGgggaCCGGG-GGCUCGgGGGCu -3'
miRNA:   3'- -CUGcGUCUa---GGCUCgCCGAGUgUCCG- -5'
31249 5' -57.7 NC_006560.1 + 61980 0.66 0.854696
Target:  5'- cACGCGGAUggCCGGGUGGUggaUCGucCuGGCg -3'
miRNA:   3'- cUGCGUCUA--GGCUCGCCG---AGU--GuCCG- -5'
31249 5' -57.7 NC_006560.1 + 54404 0.66 0.854696
Target:  5'- gGGCGCGGGaCgGAGaacuaCGGCagccccagcgcgUCGCGGGCg -3'
miRNA:   3'- -CUGCGUCUaGgCUC-----GCCG------------AGUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 125045 0.66 0.854696
Target:  5'- uGGCGCGGcggucgCCG-GCGGaCUUcCGGGCc -3'
miRNA:   3'- -CUGCGUCua----GGCuCGCC-GAGuGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 58783 0.66 0.854696
Target:  5'- -uCGUGGGUCCGGGgGGCa---GGGCc -3'
miRNA:   3'- cuGCGUCUAGGCUCgCCGagugUCCG- -5'
31249 5' -57.7 NC_006560.1 + 50257 0.66 0.854696
Target:  5'- cGCGCc--UCCGGGCGGC---CGGGCu -3'
miRNA:   3'- cUGCGucuAGGCUCGCCGaguGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 6791 0.66 0.854696
Target:  5'- gGGCuCGGGgggaCCGGG-GGCUCGgGGGCu -3'
miRNA:   3'- -CUGcGUCUa---GGCUCgCCGAGUgUCCG- -5'
31249 5' -57.7 NC_006560.1 + 6666 0.66 0.854696
Target:  5'- gGGCuCGGGgggaCCGGG-GGCUCGgGGGCu -3'
miRNA:   3'- -CUGcGUCUa---GGCUCgCCGAGUgUCCG- -5'
31249 5' -57.7 NC_006560.1 + 64278 0.66 0.854696
Target:  5'- cGGCG-AGGUCCGAGCGaCaCGcCAGGUa -3'
miRNA:   3'- -CUGCgUCUAGGCUCGCcGaGU-GUCCG- -5'
31249 5' -57.7 NC_006560.1 + 36167 0.66 0.847657
Target:  5'- -cCGCGGAccggcggacccccggUCCGGGCucggGGCUCggggccgggguccaGCGGGCc -3'
miRNA:   3'- cuGCGUCU---------------AGGCUCG----CCGAG--------------UGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 21991 0.66 0.846865
Target:  5'- cGCGCGc-UCCGcuCGGCggCGCGGGCu -3'
miRNA:   3'- cUGCGUcuAGGCucGCCGa-GUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 65043 0.66 0.846865
Target:  5'- --aGCGGggCCGGGCgcgggggcaggGGC-CGCGGGUg -3'
miRNA:   3'- cugCGUCuaGGCUCG-----------CCGaGUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 30941 0.66 0.846865
Target:  5'- aGGCGCGGGcccagacCCGGGCccagacucaGGCUCAgacccagaccCAGGCc -3'
miRNA:   3'- -CUGCGUCUa------GGCUCG---------CCGAGU----------GUCCG- -5'
31249 5' -57.7 NC_006560.1 + 95136 0.66 0.846865
Target:  5'- uACGCGGA-CCGccucaccaAGC-GCUCGCuGGCg -3'
miRNA:   3'- cUGCGUCUaGGC--------UCGcCGAGUGuCCG- -5'
31249 5' -57.7 NC_006560.1 + 108029 0.66 0.844478
Target:  5'- cGACGCGGAgcaCCGucucGGCGucggcgcgcgcgucGCUCccgACGGGCa -3'
miRNA:   3'- -CUGCGUCUa--GGC----UCGC--------------CGAG---UGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 3936 0.66 0.844478
Target:  5'- gGGgGCGGcgCCGcggucggcggcgagGGCGGC-CGcCAGGCg -3'
miRNA:   3'- -CUgCGUCuaGGC--------------UCGCCGaGU-GUCCG- -5'
31249 5' -57.7 NC_006560.1 + 83679 0.66 0.842074
Target:  5'- cGGCGCGGGgcuccggggccgcgCCGcgcuuugcGCGGUUCGCcGGCg -3'
miRNA:   3'- -CUGCGUCUa-------------GGCu-------CGCCGAGUGuCCG- -5'
31249 5' -57.7 NC_006560.1 + 75567 0.66 0.838843
Target:  5'- -cCGCAagcGcgCCGAGCGGg-CGCuGGCg -3'
miRNA:   3'- cuGCGU---CuaGGCUCGCCgaGUGuCCG- -5'
31249 5' -57.7 NC_006560.1 + 16627 0.66 0.838843
Target:  5'- cGGgGCGGGUguacgCCGGGCGGCgguugCGCGccgcccgguGGCg -3'
miRNA:   3'- -CUgCGUCUA-----GGCUCGCCGa----GUGU---------CCG- -5'
31249 5' -57.7 NC_006560.1 + 43418 0.66 0.838843
Target:  5'- -cCGCGGcgCCGGG-GGCgucggCGCGcGGCa -3'
miRNA:   3'- cuGCGUCuaGGCUCgCCGa----GUGU-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.