miRNA display CGI


Results 1 - 20 of 715 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31261 3' -67 NC_006560.1 + 774 0.65 0.479585
Target:  5'- gGCGCgGGUCcuuuCUGGgCCUCGgguucgcuuccggcCGCCGCg -3'
miRNA:   3'- -CGCGgCCAGc---GGCCgGGGGU--------------GCGGCG- -5'
31261 3' -67 NC_006560.1 + 76080 0.66 0.476979
Target:  5'- cGCaCCGGcgUCGCCcuGGCgugcccgagcgaggaCgCCCugGCCGCg -3'
miRNA:   3'- -CGcGGCC--AGCGG--CCG---------------G-GGGugCGGCG- -5'
31261 3' -67 NC_006560.1 + 24377 0.66 0.476979
Target:  5'- uGCGCCaGGUCcCCGaGCCCgaggacgugcgcgugCUggugcucuacGCGCCGCu -3'
miRNA:   3'- -CGCGG-CCAGcGGC-CGGG---------------GG----------UGCGGCG- -5'
31261 3' -67 NC_006560.1 + 140655 0.66 0.473515
Target:  5'- cGUGUCGcUCGCCGcGCCgCUGCGaCuCGCa -3'
miRNA:   3'- -CGCGGCcAGCGGC-CGGgGGUGC-G-GCG- -5'
31261 3' -67 NC_006560.1 + 50304 0.66 0.473515
Target:  5'- gGCGgUGGacgCGUCGGagaUCCugGCCGCc -3'
miRNA:   3'- -CGCgGCCa--GCGGCCgg-GGGugCGGCG- -5'
31261 3' -67 NC_006560.1 + 122659 0.66 0.473515
Target:  5'- gGgGCCGcugacCGCCGcCCCCCGCccccCCGCg -3'
miRNA:   3'- -CgCGGCca---GCGGCcGGGGGUGc---GGCG- -5'
31261 3' -67 NC_006560.1 + 93518 0.66 0.473515
Target:  5'- cGCuCCGGgcCGCCGGacCCCCCGgGUCa- -3'
miRNA:   3'- -CGcGGCCa-GCGGCC--GGGGGUgCGGcg -5'
31261 3' -67 NC_006560.1 + 37838 0.66 0.473515
Target:  5'- aCGCUGcGcUGCgGGUCCUUgaACGCCGCa -3'
miRNA:   3'- cGCGGC-CaGCGgCCGGGGG--UGCGGCG- -5'
31261 3' -67 NC_006560.1 + 68543 0.66 0.473515
Target:  5'- cGCGCCucgaGCCccGCCCCggggggCGCGCCGCc -3'
miRNA:   3'- -CGCGGccagCGGc-CGGGG------GUGCGGCG- -5'
31261 3' -67 NC_006560.1 + 392 0.66 0.473515
Target:  5'- cCGCCcGUgCGCCcGCCCCCcC-CCGCc -3'
miRNA:   3'- cGCGGcCA-GCGGcCGGGGGuGcGGCG- -5'
31261 3' -67 NC_006560.1 + 78132 0.66 0.473515
Target:  5'- cGUGCuCGGcCGCaUGuGCCUgCCgaGCGCCGCg -3'
miRNA:   3'- -CGCG-GCCaGCG-GC-CGGG-GG--UGCGGCG- -5'
31261 3' -67 NC_006560.1 + 66486 0.66 0.473515
Target:  5'- cGCGuCCaGG-CGC--GCCCCCGC-CCGCg -3'
miRNA:   3'- -CGC-GG-CCaGCGgcCGGGGGUGcGGCG- -5'
31261 3' -67 NC_006560.1 + 123026 0.66 0.473515
Target:  5'- gGCGCuacauCGGccaGCUGGCgggCCCGCGCgGCg -3'
miRNA:   3'- -CGCG-----GCCag-CGGCCGg--GGGUGCGgCG- -5'
31261 3' -67 NC_006560.1 + 17784 0.66 0.473515
Target:  5'- uCGuCCGcUCGaCGGCCUCCG-GCCGCc -3'
miRNA:   3'- cGC-GGCcAGCgGCCGGGGGUgCGGCG- -5'
31261 3' -67 NC_006560.1 + 145606 0.66 0.473515
Target:  5'- cCGCCuGcCGCCccaccugccGCCCCCGC-CCGCc -3'
miRNA:   3'- cGCGGcCaGCGGc--------CGGGGGUGcGGCG- -5'
31261 3' -67 NC_006560.1 + 12591 0.66 0.473515
Target:  5'- gGCGCacgugcuuggCGGcCGCgCGGCCgCgACGgCGCa -3'
miRNA:   3'- -CGCG----------GCCaGCG-GCCGGgGgUGCgGCG- -5'
31261 3' -67 NC_006560.1 + 79707 0.66 0.473515
Target:  5'- cCGCCcccCGCC-GCCCCCGuucaggccccCGCCGCc -3'
miRNA:   3'- cGCGGccaGCGGcCGGGGGU----------GCGGCG- -5'
31261 3' -67 NC_006560.1 + 128819 0.66 0.473515
Target:  5'- cGCGUCGGcgcgCGCCGacGCggCCGCGgCGCg -3'
miRNA:   3'- -CGCGGCCa---GCGGC--CGggGGUGCgGCG- -5'
31261 3' -67 NC_006560.1 + 12440 0.66 0.473515
Target:  5'- uGCGUCGG--GgCGGCCgCCC-CGaCCGCc -3'
miRNA:   3'- -CGCGGCCagCgGCCGG-GGGuGC-GGCG- -5'
31261 3' -67 NC_006560.1 + 78966 0.66 0.473515
Target:  5'- gGCGCCccGGaCcCCGGCCCCgACcCCGa -3'
miRNA:   3'- -CGCGG--CCaGcGGCCGGGGgUGcGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.