miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3136 5' -62.2 NC_001493.1 + 130984 0.66 0.682927
Target:  5'- cGgGUUCCGGacgGGGAGUUcugcuUCGGGGa -3'
miRNA:   3'- cCgCGGGGCCaagCCCUCAG-----AGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 15430 0.66 0.682927
Target:  5'- cGgGUUCCGGacgGGGAGUUcugcuUCGGGGa -3'
miRNA:   3'- cCgCGGGGCCaagCCCUCAG-----AGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 19170 0.66 0.673311
Target:  5'- cGgGCUCgCGGcgCGGGAGg--UGGGGa -3'
miRNA:   3'- cCgCGGG-GCCaaGCCCUCagaGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 10511 0.66 0.663664
Target:  5'- gGGCacaGCCCCGGUcCGagacuuGGAGauUUUCGGGa -3'
miRNA:   3'- -CCG---CGGGGCCAaGC------CCUC--AGAGCCCc -5'
3136 5' -62.2 NC_001493.1 + 126065 0.66 0.663664
Target:  5'- gGGCacaGCCCCGGUcCGagacuuGGAGauUUUCGGGa -3'
miRNA:   3'- -CCG---CGGGGCCAaGC------CCUC--AGAGCCCc -5'
3136 5' -62.2 NC_001493.1 + 126843 0.66 0.663664
Target:  5'- --aGCCCUGGUccCGGGAGccCUCGGu- -3'
miRNA:   3'- ccgCGGGGCCAa-GCCCUCa-GAGCCcc -5'
3136 5' -62.2 NC_001493.1 + 11289 0.66 0.663664
Target:  5'- --aGCCCUGGUccCGGGAGccCUCGGu- -3'
miRNA:   3'- ccgCGGGGCCAa-GCCCUCa-GAGCCcc -5'
3136 5' -62.2 NC_001493.1 + 20457 0.66 0.644309
Target:  5'- cGGUGUCUccucguCGuGUUCGGGAGgguugCaggCGGGGg -3'
miRNA:   3'- -CCGCGGG------GC-CAAGCCCUCa----Ga--GCCCC- -5'
3136 5' -62.2 NC_001493.1 + 36221 0.66 0.634615
Target:  5'- gGGCGgCCUGcg-CGGGGGUgCUCaguGGGGc -3'
miRNA:   3'- -CCGCgGGGCcaaGCCCUCA-GAG---CCCC- -5'
3136 5' -62.2 NC_001493.1 + 123995 0.66 0.632676
Target:  5'- uGGCGCCgcgCCGGggcucccacccaUCGGugcuggagcgcGGGUCUCaGGGGa -3'
miRNA:   3'- -CCGCGG---GGCCa-----------AGCC-----------CUCAGAG-CCCC- -5'
3136 5' -62.2 NC_001493.1 + 8441 0.66 0.632676
Target:  5'- uGGCGCCgcgCCGGggcucccacccaUCGGugcuggagcgcGGGUCUCaGGGGa -3'
miRNA:   3'- -CCGCGG---GGCCa-----------AGCC-----------CUCAGAG-CCCC- -5'
3136 5' -62.2 NC_001493.1 + 981 0.67 0.58625
Target:  5'- cGUGCgCCGGUcaguuugacaUUGGGGGcggaUCGGGGu -3'
miRNA:   3'- cCGCGgGGCCA----------AGCCCUCag--AGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 32552 0.67 0.58625
Target:  5'- aGGCuGgCCCGGgagaCGaagaaGGGGUCUCGGGc -3'
miRNA:   3'- -CCG-CgGGGCCaa--GC-----CCUCAGAGCCCc -5'
3136 5' -62.2 NC_001493.1 + 116535 0.67 0.58625
Target:  5'- cGUGCgCCGGUcaguuugacaUUGGGGGcggaUCGGGGu -3'
miRNA:   3'- cCGCGgGGCCA----------AGCCCUCag--AGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 5197 0.67 0.576642
Target:  5'- aGGCGCCUCuucUCGuGAggcgcGUCUCGGGGa -3'
miRNA:   3'- -CCGCGGGGccaAGCcCU-----CAGAGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 63950 0.68 0.548053
Target:  5'- gGGCGUCgCCGGUguggUCGGGGucuGUUUCGuGGu -3'
miRNA:   3'- -CCGCGG-GGCCA----AGCCCU---CAGAGC-CCc -5'
3136 5' -62.2 NC_001493.1 + 13297 0.68 0.529241
Target:  5'- cGGCuaccgGCCCC----UGGGAGaCUCGGGGa -3'
miRNA:   3'- -CCG-----CGGGGccaaGCCCUCaGAGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 128851 0.68 0.529241
Target:  5'- cGGCuaccgGCCCC----UGGGAGaCUCGGGGa -3'
miRNA:   3'- -CCG-----CGGGGccaaGCCCUCaGAGCCCC- -5'
3136 5' -62.2 NC_001493.1 + 5315 0.69 0.465528
Target:  5'- cGGCugcacgcucgGCCCCGGUgacCGGGGGgCUgGcGGGu -3'
miRNA:   3'- -CCG----------CGGGGCCAa--GCCCUCaGAgC-CCC- -5'
3136 5' -62.2 NC_001493.1 + 120869 0.69 0.465528
Target:  5'- cGGCugcacgcucgGCCCCGGUgacCGGGGGgCUgGcGGGu -3'
miRNA:   3'- -CCG----------CGGGGCCAa--GCCCUCaGAgC-CCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.