Results 1 - 20 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31784 | 5' | -54 | NC_006938.1 | + | 10640 | 0.66 | 0.87037 |
Target: 5'- aUGACCUacguccccgCCGAguaugugacggaggaCGGCAAGGugGucgaGGGCg -3' miRNA: 3'- gGCUGGA---------GGCU---------------GCUGUUCCugU----UCCG- -5' |
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31784 | 5' | -54 | NC_006938.1 | + | 55819 | 0.66 | 0.867241 |
Target: 5'- gUCGGCCggUCCaGCcccgAAGGACAGGGCc -3' miRNA: 3'- -GGCUGG--AGGcUGcug-UUCCUGUUCCG- -5' |
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31784 | 5' | -54 | NC_006938.1 | + | 30014 | 0.66 | 0.867241 |
Target: 5'- gUCGucCCUCCGGCGAUAccgcugucugucAGcGgGAGGCg -3' miRNA: 3'- -GGCu-GGAGGCUGCUGU------------UCcUgUUCCG- -5' |
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31784 | 5' | -54 | NC_006938.1 | + | 16079 | 0.66 | 0.867241 |
Target: 5'- aUGGCC-CCaaccACGACGAGGucugagcgucuCAAGGCg -3' miRNA: 3'- gGCUGGaGGc---UGCUGUUCCu----------GUUCCG- -5' |
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31784 | 5' | -54 | NC_006938.1 | + | 46305 | 0.66 | 0.867241 |
Target: 5'- -gGACCcCaCGAuCGAucCAAGuGGCAGGGCg -3' miRNA: 3'- ggCUGGaG-GCU-GCU--GUUC-CUGUUCCG- -5' |
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31784 | 5' | -54 | NC_006938.1 | + | 40864 | 0.66 | 0.867241 |
Target: 5'- aCGACCUCgGAgGACGuuGuCAcGGCc -3' miRNA: 3'- gGCUGGAGgCUgCUGUucCuGUuCCG- -5' |
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31784 | 5' | -54 | NC_006938.1 | + | 32981 | 0.66 | 0.867241 |
Target: 5'- cCCGuuCUCCGugGGaugguGGGcCGAGaGCg -3' miRNA: 3'- -GGCugGAGGCugCUgu---UCCuGUUC-CG- -5' |
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31784 | 5' | -54 | NC_006938.1 | + | 18216 | 0.66 | 0.867241 |
Target: 5'- gCCGAUgacgCUGugGACAAGcacuucaucGCGAGGCa -3' miRNA: 3'- -GGCUGga--GGCugCUGUUCc--------UGUUCCG- -5' |
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31784 | 5' | -54 | NC_006938.1 | + | 20728 | 0.66 | 0.862478 |
Target: 5'- cUCGACCggaggcaggugucgCUGAUGGaggcGGACAAGGUg -3' miRNA: 3'- -GGCUGGa-------------GGCUGCUguu-CCUGUUCCG- -5' |
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31784 | 5' | -54 | NC_006938.1 | + | 18040 | 0.66 | 0.859256 |
Target: 5'- gCGGCgUCaagGuCGACGAGGACc-GGCu -3' miRNA: 3'- gGCUGgAGg--CuGCUGUUCCUGuuCCG- -5' |
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31784 | 5' | -54 | NC_006938.1 | + | 51556 | 0.66 | 0.859256 |
Target: 5'- cCCGGC-UCCGgccGCGACGAGGAuguCGAaGCc -3' miRNA: 3'- -GGCUGgAGGC---UGCUGUUCCU---GUUcCG- -5' |
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31784 | 5' | -54 | NC_006938.1 | + | 9871 | 0.66 | 0.859256 |
Target: 5'- -aGGCCUCCGuCGAgCuggcccAGGAgaAGGGCg -3' miRNA: 3'- ggCUGGAGGCuGCU-Gu-----UCCUg-UUCCG- -5' |
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31784 | 5' | -54 | NC_006938.1 | + | 51962 | 0.66 | 0.859256 |
Target: 5'- cCCGAUCUgCCgcgaagGACGugGAGGACcucGCa -3' miRNA: 3'- -GGCUGGA-GG------CUGCugUUCCUGuucCG- -5' |
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31784 | 5' | -54 | NC_006938.1 | + | 14621 | 0.66 | 0.859256 |
Target: 5'- gCUGGCUgCCGACGGucGGGAaccuCGAGGUc -3' miRNA: 3'- -GGCUGGaGGCUGCUguUCCU----GUUCCG- -5' |
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31784 | 5' | -54 | NC_006938.1 | + | 34591 | 0.66 | 0.859256 |
Target: 5'- cUCGACCUgCCGACGGacgccgacgcCAAguacaucggaguGGACAgcucuGGGCu -3' miRNA: 3'- -GGCUGGA-GGCUGCU----------GUU------------CCUGU-----UCCG- -5' |
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31784 | 5' | -54 | NC_006938.1 | + | 17553 | 0.66 | 0.851042 |
Target: 5'- gCGACaugagaaCGGCGACAAccuGGACGcGGCc -3' miRNA: 3'- gGCUGgag----GCUGCUGUU---CCUGUuCCG- -5' |
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31784 | 5' | -54 | NC_006938.1 | + | 13182 | 0.66 | 0.851042 |
Target: 5'- cCCGGCaccaCCGG-GAguGGGACAGGcGCg -3' miRNA: 3'- -GGCUGga--GGCUgCUguUCCUGUUC-CG- -5' |
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31784 | 5' | -54 | NC_006938.1 | + | 43422 | 0.66 | 0.851042 |
Target: 5'- -aGGCCUccCCGugGgagGCGGGGACAuacgcggucGGCg -3' miRNA: 3'- ggCUGGA--GGCugC---UGUUCCUGUu--------CCG- -5' |
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31784 | 5' | -54 | NC_006938.1 | + | 45157 | 0.66 | 0.851042 |
Target: 5'- uCUGACUUCUGcgacCGACAuuGuCGAGGCa -3' miRNA: 3'- -GGCUGGAGGCu---GCUGUucCuGUUCCG- -5' |
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31784 | 5' | -54 | NC_006938.1 | + | 36989 | 0.66 | 0.84516 |
Target: 5'- aCGGCUcugauccucaugcugUCCGAgGuCAGGGACAGccggaccGGCg -3' miRNA: 3'- gGCUGG---------------AGGCUgCuGUUCCUGUU-------CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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