miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31870 3' -52 NC_006938.1 + 5576 0.66 0.907397
Target:  5'- ---aGGCCGAgaAGGAGGUCGCcgcucucgaGGCCa -3'
miRNA:   3'- gaggCUGGUUagUCCUUCAGUG---------UCGG- -5'
31870 3' -52 NC_006938.1 + 8703 0.66 0.907397
Target:  5'- uUUCGACCAccuGUCaAGGAAGaacaaaaugCACGGaCCa -3'
miRNA:   3'- gAGGCUGGU---UAG-UCCUUCa--------GUGUC-GG- -5'
31870 3' -52 NC_006938.1 + 1113 0.66 0.907397
Target:  5'- cCUCCGAuCCGAUC--GAGGUCcagaaggacauGCAGCa -3'
miRNA:   3'- -GAGGCU-GGUUAGucCUUCAG-----------UGUCGg -5'
31870 3' -52 NC_006938.1 + 11053 0.66 0.903351
Target:  5'- -cCCGGCCGAUguguggcagcaagugCAGGGGaacgcggcucGUCGCGGCg -3'
miRNA:   3'- gaGGCUGGUUA---------------GUCCUU----------CAGUGUCGg -5'
31870 3' -52 NC_006938.1 + 58206 0.66 0.900598
Target:  5'- uCUCCcacGACCAacGUCuGGGAGGUgAUcGCCu -3'
miRNA:   3'- -GAGG---CUGGU--UAG-UCCUUCAgUGuCGG- -5'
31870 3' -52 NC_006938.1 + 17592 0.66 0.898505
Target:  5'- gCUCCgcuacaucaagGACCAGUUcaagacguucgacgGGGAgcuGGUCGgAGCCa -3'
miRNA:   3'- -GAGG-----------CUGGUUAG--------------UCCU---UCAGUgUCGG- -5'
31870 3' -52 NC_006938.1 + 59882 0.66 0.893525
Target:  5'- gCUuuGGCguuggCAAUC-GGAAcgcuGUCACGGCCa -3'
miRNA:   3'- -GAggCUG-----GUUAGuCCUU----CAGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 24561 0.66 0.893525
Target:  5'- cCUCCGugCAGUCuucgucccagAGGcGGUgcCACgGGCCg -3'
miRNA:   3'- -GAGGCugGUUAG----------UCCuUCA--GUG-UCGG- -5'
31870 3' -52 NC_006938.1 + 41447 0.66 0.893525
Target:  5'- -gCCGAUCAcaGUCAGGuccAGUC-CcGCCa -3'
miRNA:   3'- gaGGCUGGU--UAGUCCu--UCAGuGuCGG- -5'
31870 3' -52 NC_006938.1 + 45972 0.66 0.886182
Target:  5'- gUCCG-CC-GUCAGcGAGGaCAgGGCCg -3'
miRNA:   3'- gAGGCuGGuUAGUC-CUUCaGUgUCGG- -5'
31870 3' -52 NC_006938.1 + 27030 0.66 0.886182
Target:  5'- aCUCCGGagGGaCAGGcccAGGUCACgGGCCg -3'
miRNA:   3'- -GAGGCUggUUaGUCC---UUCAGUG-UCGG- -5'
31870 3' -52 NC_006938.1 + 40864 0.66 0.886182
Target:  5'- --aCGACCucggAGGAcguuGUCACGGCCc -3'
miRNA:   3'- gagGCUGGuuagUCCUu---CAGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 10182 0.66 0.885433
Target:  5'- cCUCgGACCA-------GGUCACGGCCg -3'
miRNA:   3'- -GAGgCUGGUuaguccuUCAGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 39835 0.67 0.878574
Target:  5'- -aCCGGCCGGaCGGacacaacccuGAccGUCACAGCCa -3'
miRNA:   3'- gaGGCUGGUUaGUC----------CUu-CAGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 38583 0.67 0.878574
Target:  5'- cCUCgGACCAGgagaucgCAGuucGUCugAGCCg -3'
miRNA:   3'- -GAGgCUGGUUa------GUCcuuCAGugUCGG- -5'
31870 3' -52 NC_006938.1 + 41152 0.67 0.877798
Target:  5'- gCUCCuucGCCGcgCGGGAccgAGUCACAacguucaagacccGCCu -3'
miRNA:   3'- -GAGGc--UGGUuaGUCCU---UCAGUGU-------------CGG- -5'
31870 3' -52 NC_006938.1 + 42500 0.67 0.870706
Target:  5'- gCUCCGGCCGcGUCGGcGAAGaacUCGacGCCg -3'
miRNA:   3'- -GAGGCUGGU-UAGUC-CUUC---AGUguCGG- -5'
31870 3' -52 NC_006938.1 + 60913 0.67 0.870706
Target:  5'- uUCCGacGCCAGaCAGGGucguGGUCGaccagacacCAGCCg -3'
miRNA:   3'- gAGGC--UGGUUaGUCCU----UCAGU---------GUCGG- -5'
31870 3' -52 NC_006938.1 + 59238 0.67 0.870706
Target:  5'- uCUCCGGCUgc-CAGGAcaGG-CGCGGUCu -3'
miRNA:   3'- -GAGGCUGGuuaGUCCU--UCaGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 40956 0.67 0.862586
Target:  5'- -cCCGcgaugggaauGCCAGUCAGGAAGUaaCACAuggGCa -3'
miRNA:   3'- gaGGC----------UGGUUAGUCCUUCA--GUGU---CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.