miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32083 3' -47.7 NC_007016.1 + 27056 0.66 0.999475
Target:  5'- --cGCGAcACCCAAaccaugaGCGCCCucccGGa -3'
miRNA:   3'- auuUGUUuUGGGUUg------CGCGGGuaa-CC- -5'
32083 3' -47.7 NC_007016.1 + 40507 0.66 0.999186
Target:  5'- aAAAuCGAcGCCCAugccgcagACGUGgCCGUUGGc -3'
miRNA:   3'- aUUU-GUUuUGGGU--------UGCGCgGGUAACC- -5'
32083 3' -47.7 NC_007016.1 + 156 0.66 0.999186
Target:  5'- ---cCGGGGCCCucgguCGCGCCCcg-GG -3'
miRNA:   3'- auuuGUUUUGGGuu---GCGCGGGuaaCC -5'
32083 3' -47.7 NC_007016.1 + 20106 0.66 0.998996
Target:  5'- uUAAACGGGACCC--CGagGCCCAUgucGGc -3'
miRNA:   3'- -AUUUGUUUUGGGuuGCg-CGGGUAa--CC- -5'
32083 3' -47.7 NC_007016.1 + 19981 0.66 0.998996
Target:  5'- gAAGCAGcaggGGCCCAACGUGgUUGUUGu -3'
miRNA:   3'- aUUUGUU----UUGGGUUGCGCgGGUAACc -5'
32083 3' -47.7 NC_007016.1 + 28320 0.66 0.998975
Target:  5'- cGAACAAccuGACCCAgggcucguggucgGCGUGCCCc---- -3'
miRNA:   3'- aUUUGUU---UUGGGU-------------UGCGCGGGuaacc -5'
32083 3' -47.7 NC_007016.1 + 56929 0.66 0.998769
Target:  5'- gUGggUAAGauACCCGccaGCGCCCcaAUUGGu -3'
miRNA:   3'- -AUuuGUUU--UGGGUug-CGCGGG--UAACC- -5'
32083 3' -47.7 NC_007016.1 + 122413 0.66 0.998769
Target:  5'- --uACAGAGCauguaCAGCGCguuuguGCCCGUUGu -3'
miRNA:   3'- auuUGUUUUGg----GUUGCG------CGGGUAACc -5'
32083 3' -47.7 NC_007016.1 + 14177 0.66 0.998769
Target:  5'- --uACAcGACCagggaaGGCGCGCCCAa--- -3'
miRNA:   3'- auuUGUuUUGGg-----UUGCGCGGGUaacc -5'
32083 3' -47.7 NC_007016.1 + 106879 0.66 0.998769
Target:  5'- -cAAUAAGAgCaauauACGCGCCCggUGGu -3'
miRNA:   3'- auUUGUUUUgGgu---UGCGCGGGuaACC- -5'
32083 3' -47.7 NC_007016.1 + 107416 0.66 0.998769
Target:  5'- aAAACGggcAAAUCCAGCGCGUgCugUGGc -3'
miRNA:   3'- aUUUGU---UUUGGGUUGCGCGgGuaACC- -5'
32083 3' -47.7 NC_007016.1 + 116067 0.67 0.9985
Target:  5'- aGAACAuaucACCCccCGCGCCCGc--- -3'
miRNA:   3'- aUUUGUuu--UGGGuuGCGCGGGUaacc -5'
32083 3' -47.7 NC_007016.1 + 122666 0.67 0.9985
Target:  5'- gGAACAgGGACUgGAaggccaGCGCCCAcgGGg -3'
miRNA:   3'- aUUUGU-UUUGGgUUg-----CGCGGGUaaCC- -5'
32083 3' -47.7 NC_007016.1 + 130269 0.67 0.9985
Target:  5'- gGAGCGGGACCCGgggGCG-GCCCc--GGc -3'
miRNA:   3'- aUUUGUUUUGGGU---UGCgCGGGuaaCC- -5'
32083 3' -47.7 NC_007016.1 + 16821 0.67 0.9985
Target:  5'- gAGGCAGAACCgGACcgugugcCGCCCGUUc- -3'
miRNA:   3'- aUUUGUUUUGGgUUGc------GCGGGUAAcc -5'
32083 3' -47.7 NC_007016.1 + 13257 0.67 0.998182
Target:  5'- --cACAAAuGCaCCGAUGCGCCCGc--- -3'
miRNA:   3'- auuUGUUU-UG-GGUUGCGCGGGUaacc -5'
32083 3' -47.7 NC_007016.1 + 6303 0.67 0.998182
Target:  5'- -cAGCGAAGCCUuuaagGGCGUGCCCu---- -3'
miRNA:   3'- auUUGUUUUGGG-----UUGCGCGGGuaacc -5'
32083 3' -47.7 NC_007016.1 + 110117 0.67 0.998182
Target:  5'- ---uCAGAACCgGACcgGCGUCCGggUGGg -3'
miRNA:   3'- auuuGUUUUGGgUUG--CGCGGGUa-ACC- -5'
32083 3' -47.7 NC_007016.1 + 50585 0.67 0.998182
Target:  5'- aAAACGAAAucucCCCGAcuCGUGCaCCGUUGa -3'
miRNA:   3'- aUUUGUUUU----GGGUU--GCGCG-GGUAACc -5'
32083 3' -47.7 NC_007016.1 + 22871 0.67 0.99781
Target:  5'- -uGGCGGA--CCGGCgGCGCCgAUUGGg -3'
miRNA:   3'- auUUGUUUugGGUUG-CGCGGgUAACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.