miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33074 5' -54.2 NC_007497.1 + 14159 0.66 0.7265
Target:  5'- uGACAGCGCuuCGCaAGUucgcgGAcgCAGGCa -3'
miRNA:   3'- -CUGUUGCGc-GCGcUCGa----CUuaGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 33580 0.66 0.7265
Target:  5'- uGCAcggGCGCGUGCugcugcGCUGggUCAGaaaGCa -3'
miRNA:   3'- cUGU---UGCGCGCGcu----CGACuuAGUC---CG- -5'
33074 5' -54.2 NC_007497.1 + 4268 0.66 0.715553
Target:  5'- aGCGGCGUGUGCGucGCcGAucagcaCGGGCg -3'
miRNA:   3'- cUGUUGCGCGCGCu-CGaCUua----GUCCG- -5'
33074 5' -54.2 NC_007497.1 + 38683 0.66 0.715553
Target:  5'- -uUAACGCGCGUGcGCUGuugC-GGCc -3'
miRNA:   3'- cuGUUGCGCGCGCuCGACuuaGuCCG- -5'
33074 5' -54.2 NC_007497.1 + 38621 0.66 0.704519
Target:  5'- aACAGCGCacGCGCGuuaAGCggcaguucgGuAAUCGGGCc -3'
miRNA:   3'- cUGUUGCG--CGCGC---UCGa--------C-UUAGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 34290 0.66 0.704519
Target:  5'- aGACggUGCGC-CGAucgucaCUGAcgaggAUCAGGCg -3'
miRNA:   3'- -CUGuuGCGCGcGCUc-----GACU-----UAGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 23236 0.66 0.704519
Target:  5'- uGACGA-GCGCGCGGGa-GAG-CuGGCg -3'
miRNA:   3'- -CUGUUgCGCGCGCUCgaCUUaGuCCG- -5'
33074 5' -54.2 NC_007497.1 + 32056 0.66 0.69341
Target:  5'- cGACGcuGCGUGUGCGcaaGGCcGggUUcGGCg -3'
miRNA:   3'- -CUGU--UGCGCGCGC---UCGaCuuAGuCCG- -5'
33074 5' -54.2 NC_007497.1 + 30781 0.66 0.671017
Target:  5'- uGACAGCGCGuCGUGucgcGGCguAGUCGcGGCg -3'
miRNA:   3'- -CUGUUGCGC-GCGC----UCGacUUAGU-CCG- -5'
33074 5' -54.2 NC_007497.1 + 35633 0.66 0.671017
Target:  5'- cGCGAuCGCGCGCG-GCaUGGGcCGGGg -3'
miRNA:   3'- cUGUU-GCGCGCGCuCG-ACUUaGUCCg -5'
33074 5' -54.2 NC_007497.1 + 17584 0.67 0.659757
Target:  5'- uGCGGCGCGUGCaAGUUccgcgCGGGCg -3'
miRNA:   3'- cUGUUGCGCGCGcUCGAcuua-GUCCG- -5'
33074 5' -54.2 NC_007497.1 + 37769 0.67 0.659757
Target:  5'- aGACAugGCGCuugGCgGAGC-GA--CGGGCg -3'
miRNA:   3'- -CUGUugCGCG---CG-CUCGaCUuaGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 19930 0.67 0.659757
Target:  5'- cGACGAC-CGCGaGGGUUGccgguuuccAUCAGGCg -3'
miRNA:   3'- -CUGUUGcGCGCgCUCGACu--------UAGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 21404 0.67 0.659757
Target:  5'- -----aGCGacaGCGAGCUGAgccGUCcGGCg -3'
miRNA:   3'- cuguugCGCg--CGCUCGACU---UAGuCCG- -5'
33074 5' -54.2 NC_007497.1 + 16054 0.67 0.64847
Target:  5'- uGACAACGgguugaUGCGCGAa-UGGcgCGGGCg -3'
miRNA:   3'- -CUGUUGC------GCGCGCUcgACUuaGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 33410 0.67 0.64847
Target:  5'- aGCAGCGgauCGCGC-AGCUGcgcGUCgAGGCg -3'
miRNA:   3'- cUGUUGC---GCGCGcUCGACu--UAG-UCCG- -5'
33074 5' -54.2 NC_007497.1 + 37935 0.67 0.64847
Target:  5'- uACGGagauCGCGCGGGCgaucGAUCAGGUg -3'
miRNA:   3'- cUGUUgc--GCGCGCUCGac--UUAGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 19724 0.67 0.64847
Target:  5'- cGGCAuGC-CGUGCGGGC---AUCGGGCa -3'
miRNA:   3'- -CUGU-UGcGCGCGCUCGacuUAGUCCG- -5'
33074 5' -54.2 NC_007497.1 + 18520 0.67 0.637167
Target:  5'- -cCGACGauuCGCGAGC-GggUCgAGGCg -3'
miRNA:   3'- cuGUUGCgc-GCGCUCGaCuuAG-UCCG- -5'
33074 5' -54.2 NC_007497.1 + 22923 0.67 0.637167
Target:  5'- cGCAGCGCGCGCGAaC-GAu---GGCg -3'
miRNA:   3'- cUGUUGCGCGCGCUcGaCUuaguCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.