miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33097 3' -57.1 NC_007497.1 + 6909 0.66 0.584486
Target:  5'- aGGGCGCaauucgUACggagaucGCGCGGGCGAUCgAUCa -3'
miRNA:   3'- -CUCGUG------GUGaa-----UGCGCCCGCUGG-UGG- -5'
33097 3' -57.1 NC_007497.1 + 8610 0.66 0.584485
Target:  5'- -cGCAgCCACacgAC-CGGGCGGCCgacgcGCCc -3'
miRNA:   3'- cuCGU-GGUGaa-UGcGCCCGCUGG-----UGG- -5'
33097 3' -57.1 NC_007497.1 + 14104 0.66 0.584485
Target:  5'- -uGCugCGUggACGCcGGCGGCCugCu -3'
miRNA:   3'- cuCGugGUGaaUGCGcCCGCUGGugG- -5'
33097 3' -57.1 NC_007497.1 + 40388 0.66 0.583392
Target:  5'- cAGCGCCA---AC-CGGGCccgucagGGCCGCCg -3'
miRNA:   3'- cUCGUGGUgaaUGcGCCCG-------CUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 8013 0.66 0.562709
Target:  5'- -cGCugCGCgagGCgGCGGGCGuCgaGCCg -3'
miRNA:   3'- cuCGugGUGaa-UG-CGCCCGCuGg-UGG- -5'
33097 3' -57.1 NC_007497.1 + 2209 0.66 0.562708
Target:  5'- uAGCACgGCU--CGCcacGGCaGGCCGCCa -3'
miRNA:   3'- cUCGUGgUGAauGCGc--CCG-CUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 37154 0.66 0.561625
Target:  5'- --uCGCCGCUUGCaCGGGCcgugcggagaagcGACUGCCc -3'
miRNA:   3'- cucGUGGUGAAUGcGCCCG-------------CUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 42593 0.66 0.551901
Target:  5'- cGAGCcguGCUAUUUGCGCGugcccGGUGuCUGCCg -3'
miRNA:   3'- -CUCG---UGGUGAAUGCGC-----CCGCuGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 23479 0.66 0.547594
Target:  5'- -cGCGCgCGCUgaucaggugcacgACGCcGGCGcCCGCCg -3'
miRNA:   3'- cuCGUG-GUGAa------------UGCGcCCGCuGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 42067 0.66 0.530482
Target:  5'- ---uGCCACguugACGUGaGGCGGCCuuuuGCCg -3'
miRNA:   3'- cucgUGGUGaa--UGCGC-CCGCUGG----UGG- -5'
33097 3' -57.1 NC_007497.1 + 1700 0.66 0.529419
Target:  5'- gGAGCGCCGCaaagagaUUGCGCcGGCGcuUCACg -3'
miRNA:   3'- -CUCGUGGUG-------AAUGCGcCCGCu-GGUGg -5'
33097 3' -57.1 NC_007497.1 + 34489 0.66 0.529419
Target:  5'- aAGCGCCACcgugccgACGgucgucaggaugcCGGGCagcccgccGACCACCg -3'
miRNA:   3'- cUCGUGGUGaa-----UGC-------------GCCCG--------CUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 21324 0.67 0.519886
Target:  5'- cAGCGCgCGCgagauCGCcgacaugaaGGCGGCCGCCg -3'
miRNA:   3'- cUCGUG-GUGaau--GCGc--------CCGCUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 4570 0.67 0.519886
Target:  5'- cGAGCGCCGCgucuUGCGu-CGAuCCGCCg -3'
miRNA:   3'- -CUCGUGGUGaau-GCGCccGCU-GGUGG- -5'
33097 3' -57.1 NC_007497.1 + 200 0.67 0.519886
Target:  5'- gGAGCcgucugucGCCGCggUGCGCGacgauGUGAUCGCCg -3'
miRNA:   3'- -CUCG--------UGGUGa-AUGCGCc----CGCUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 29037 0.67 0.513569
Target:  5'- cGAGCAcCCACcgaugACGCcgguggagaaaagcgGGGCGAaacuuCCGCCc -3'
miRNA:   3'- -CUCGU-GGUGaa---UGCG---------------CCCGCU-----GGUGG- -5'
33097 3' -57.1 NC_007497.1 + 16068 0.67 0.505194
Target:  5'- -uGCGCgAaugGCGCGGGCGcgucuggcucaauCCGCCg -3'
miRNA:   3'- cuCGUGgUgaaUGCGCCCGCu------------GGUGG- -5'
33097 3' -57.1 NC_007497.1 + 35712 0.67 0.48248
Target:  5'- cAGCGCCACcgccUUGCugaucgucucgaccaGCGGGCcGACUugCu -3'
miRNA:   3'- cUCGUGGUG----AAUG---------------CGCCCG-CUGGugG- -5'
33097 3' -57.1 NC_007497.1 + 33177 0.67 0.468286
Target:  5'- uGGGCGCCGCa-AUGCGGuaGCagcucaucuGGCCGCCa -3'
miRNA:   3'- -CUCGUGGUGaaUGCGCC--CG---------CUGGUGG- -5'
33097 3' -57.1 NC_007497.1 + 2901 0.68 0.455299
Target:  5'- -cGCGCCGCUUcacggacguuccgaACuggcgugaugGCGGGCGgcGCCAUCg -3'
miRNA:   3'- cuCGUGGUGAA--------------UG----------CGCCCGC--UGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.