miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33159 3' -56 NC_007497.1 + 26300 0.66 0.65205
Target:  5'- uCCGAAaACuucguGGCGUCGucGCgGCUCGg -3'
miRNA:   3'- -GGCUUgUGu----CCGCGGUuaCGgCGAGC- -5'
33159 3' -56 NC_007497.1 + 16968 0.66 0.640998
Target:  5'- uUCGAAuCGCugaaAGGCGCauggcaauCGAUGCCGCcguUCGa -3'
miRNA:   3'- -GGCUU-GUG----UCCGCG--------GUUACGGCG---AGC- -5'
33159 3' -56 NC_007497.1 + 2540 0.66 0.640998
Target:  5'- cCCGGGCGugcGCGCCGGcgGCCGCggCGc -3'
miRNA:   3'- -GGCUUGUgucCGCGGUUa-CGGCGa-GC- -5'
33159 3' -56 NC_007497.1 + 8819 0.66 0.640998
Target:  5'- gCGGAUACGcGGaaGCCGcgGCCGCggCGu -3'
miRNA:   3'- gGCUUGUGU-CCg-CGGUuaCGGCGa-GC- -5'
33159 3' -56 NC_007497.1 + 14746 0.66 0.629938
Target:  5'- gCGGAUcaGCGGGUGCgAAcGCCgGUUCGg -3'
miRNA:   3'- gGCUUG--UGUCCGCGgUUaCGG-CGAGC- -5'
33159 3' -56 NC_007497.1 + 12179 0.66 0.629938
Target:  5'- gCGAGCgGCAuuGGCGCCuGUGUUcgguugGCUCGg -3'
miRNA:   3'- gGCUUG-UGU--CCGCGGuUACGG------CGAGC- -5'
33159 3' -56 NC_007497.1 + 2582 0.66 0.629938
Target:  5'- gCCGAACgauugGCAGaCGCCGAUGgaGUUCa -3'
miRNA:   3'- -GGCUUG-----UGUCcGCGGUUACggCGAGc -5'
33159 3' -56 NC_007497.1 + 41102 0.66 0.629938
Target:  5'- uCCGcuuCGCGGuGaCGCCGGUGCC-CUCc -3'
miRNA:   3'- -GGCuu-GUGUC-C-GCGGUUACGGcGAGc -5'
33159 3' -56 NC_007497.1 + 16905 0.66 0.629938
Target:  5'- cUCGuucuCGCAGGUcCCGGUGC-GCUCGu -3'
miRNA:   3'- -GGCuu--GUGUCCGcGGUUACGgCGAGC- -5'
33159 3' -56 NC_007497.1 + 38237 0.66 0.629938
Target:  5'- aCGAgGCGguGGCGCCGAUGaaGUUg- -3'
miRNA:   3'- gGCU-UGUguCCGCGGUUACggCGAgc -5'
33159 3' -56 NC_007497.1 + 24404 0.66 0.61888
Target:  5'- aUCGcGCGCAGGaauaCGCCgAGUGCCcccuGCUUGa -3'
miRNA:   3'- -GGCuUGUGUCC----GCGG-UUACGG----CGAGC- -5'
33159 3' -56 NC_007497.1 + 41417 0.66 0.61888
Target:  5'- cCCGcGCGCAGuGCGCCGcacgGCUGguUUCGa -3'
miRNA:   3'- -GGCuUGUGUC-CGCGGUua--CGGC--GAGC- -5'
33159 3' -56 NC_007497.1 + 21340 0.66 0.61888
Target:  5'- gCCG-ACAUgaAGGCgGCC---GCCGCUCa -3'
miRNA:   3'- -GGCuUGUG--UCCG-CGGuuaCGGCGAGc -5'
33159 3' -56 NC_007497.1 + 33338 0.66 0.607832
Target:  5'- cUCGAcGCGCAGcuGCGCgAuccGCUGCUCGa -3'
miRNA:   3'- -GGCU-UGUGUC--CGCGgUua-CGGCGAGC- -5'
33159 3' -56 NC_007497.1 + 12001 0.66 0.607832
Target:  5'- gCCGGGCGCucgcucuguaucAGGagucCGCCGAgaacGCCGCUgGg -3'
miRNA:   3'- -GGCUUGUG------------UCC----GCGGUUa---CGGCGAgC- -5'
33159 3' -56 NC_007497.1 + 41662 0.66 0.596807
Target:  5'- uCCGAGCGCGaGa--CAGaGCCGCUCGa -3'
miRNA:   3'- -GGCUUGUGUcCgcgGUUaCGGCGAGC- -5'
33159 3' -56 NC_007497.1 + 37699 0.66 0.596807
Target:  5'- cCCGu-CGCuccgccaaGCGCCAugucucgcGUGCCGCUCa -3'
miRNA:   3'- -GGCuuGUGuc------CGCGGU--------UACGGCGAGc -5'
33159 3' -56 NC_007497.1 + 11384 0.67 0.589107
Target:  5'- aUCGGACGCGGGCGggcggcgcccguuCCGA-GCCggaaagcaggcgucuGCUCGa -3'
miRNA:   3'- -GGCUUGUGUCCGC-------------GGUUaCGG---------------CGAGC- -5'
33159 3' -56 NC_007497.1 + 21828 0.67 0.585812
Target:  5'- cCCaAGCgACGGGCuGCCGAUGCUuccuCUCGa -3'
miRNA:   3'- -GGcUUG-UGUCCG-CGGUUACGGc---GAGC- -5'
33159 3' -56 NC_007497.1 + 38965 0.67 0.585812
Target:  5'- uCCGcACccucCAGuGCGCCGA--CCGCUCGg -3'
miRNA:   3'- -GGCuUGu---GUC-CGCGGUUacGGCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.