miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33167 3' -56.2 NC_007497.1 + 19411 0.66 0.639093
Target:  5'- gCCGUGUCGGCGccccCGAUCuCCAUCGg -3'
miRNA:   3'- -GGCGUAGUCGCcgu-GCUGGuGGUAGU- -5'
33167 3' -56.2 NC_007497.1 + 29331 0.66 0.639093
Target:  5'- gCGCAUCAcauGUACGGCCGCCuGUCc -3'
miRNA:   3'- gGCGUAGUcgcCGUGCUGGUGG-UAGu -5'
33167 3' -56.2 NC_007497.1 + 5524 0.66 0.639093
Target:  5'- gCGUAgUCGGCGaGCGCcaucagGACCGCCuUCGc -3'
miRNA:   3'- gGCGU-AGUCGC-CGUG------CUGGUGGuAGU- -5'
33167 3' -56.2 NC_007497.1 + 34643 0.66 0.628024
Target:  5'- gCCGCGguggcgccucguUCGGCGcgcucGCGCG-CCugCGUCGc -3'
miRNA:   3'- -GGCGU------------AGUCGC-----CGUGCuGGugGUAGU- -5'
33167 3' -56.2 NC_007497.1 + 37145 0.66 0.628024
Target:  5'- -gGCAUgGuGCGGCAguacaccugguCGGCgGCCGUCGa -3'
miRNA:   3'- ggCGUAgU-CGCCGU-----------GCUGgUGGUAGU- -5'
33167 3' -56.2 NC_007497.1 + 15133 0.66 0.628024
Target:  5'- -gGCAUC-GCGGCccuccGCGauguacuggcggGCCACUAUCAg -3'
miRNA:   3'- ggCGUAGuCGCCG-----UGC------------UGGUGGUAGU- -5'
33167 3' -56.2 NC_007497.1 + 17273 0.66 0.628024
Target:  5'- gCGCGggcggCuGCGGgGCGGCCGCgAUUc -3'
miRNA:   3'- gGCGUa----GuCGCCgUGCUGGUGgUAGu -5'
33167 3' -56.2 NC_007497.1 + 43047 0.66 0.628024
Target:  5'- cUCGCAUCgAGCGcGCugGGCUuCUAUaCAa -3'
miRNA:   3'- -GGCGUAG-UCGC-CGugCUGGuGGUA-GU- -5'
33167 3' -56.2 NC_007497.1 + 17568 0.66 0.616959
Target:  5'- uCCGCGcgGGCGGCGucuCGAUCAUCAa-- -3'
miRNA:   3'- -GGCGUagUCGCCGU---GCUGGUGGUagu -5'
33167 3' -56.2 NC_007497.1 + 12214 0.66 0.615853
Target:  5'- aCUGCugagAUCAGCgccaucgGGCGCGACCAUgAUg- -3'
miRNA:   3'- -GGCG----UAGUCG-------CCGUGCUGGUGgUAgu -5'
33167 3' -56.2 NC_007497.1 + 42660 0.66 0.605907
Target:  5'- gCGcCAUCAGCGGguCGAUCuugGCgGUCc -3'
miRNA:   3'- gGC-GUAGUCGCCguGCUGG---UGgUAGu -5'
33167 3' -56.2 NC_007497.1 + 35852 0.66 0.605907
Target:  5'- gCUGUAUCAGCGGauCGCGAacaACaCGUCGc -3'
miRNA:   3'- -GGCGUAGUCGCC--GUGCUgg-UG-GUAGU- -5'
33167 3' -56.2 NC_007497.1 + 26222 0.66 0.605907
Target:  5'- cCCgGCGUgCAGgGGCAgcCGACUACCGa-- -3'
miRNA:   3'- -GG-CGUA-GUCgCCGU--GCUGGUGGUagu -5'
33167 3' -56.2 NC_007497.1 + 40238 0.66 0.605907
Target:  5'- aCGCGUCGGacguCGGCA-GACCcGCCuUCAc -3'
miRNA:   3'- gGCGUAGUC----GCCGUgCUGG-UGGuAGU- -5'
33167 3' -56.2 NC_007497.1 + 33418 0.66 0.597082
Target:  5'- cCCGCGUCcgaugggccagcgcaGGCGcauugacgccgauacGCGCGACCugcgcggccgacugcGCCAUCGu -3'
miRNA:   3'- -GGCGUAG---------------UCGC---------------CGUGCUGG---------------UGGUAGU- -5'
33167 3' -56.2 NC_007497.1 + 33310 0.66 0.594879
Target:  5'- aCUGCGUCAGCuugucGGuCGCcACCGCC-UCGa -3'
miRNA:   3'- -GGCGUAGUCG-----CC-GUGcUGGUGGuAGU- -5'
33167 3' -56.2 NC_007497.1 + 44389 0.66 0.583882
Target:  5'- gCCGguUugcucCGGCGGCACcGCCGCgGUUg -3'
miRNA:   3'- -GGCguA-----GUCGCCGUGcUGGUGgUAGu -5'
33167 3' -56.2 NC_007497.1 + 7909 0.66 0.583882
Target:  5'- uUGCAUCGGUGGCGugUGAUUugCAUg- -3'
miRNA:   3'- gGCGUAGUCGCCGU--GCUGGugGUAgu -5'
33167 3' -56.2 NC_007497.1 + 30649 0.66 0.583882
Target:  5'- aCUGCAcagcgaUCGGCGGCgAUGugCugCGUUu -3'
miRNA:   3'- -GGCGU------AGUCGCCG-UGCugGugGUAGu -5'
33167 3' -56.2 NC_007497.1 + 13701 0.67 0.572926
Target:  5'- cCCGUG-CGGCGGCccauGCGGCgGCCcgCu -3'
miRNA:   3'- -GGCGUaGUCGCCG----UGCUGgUGGuaGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.