miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33277 3' -54.6 NC_007605.1 + 93768 0.66 0.959665
Target:  5'- aGGAgagGCCUGCUguguugaaagAGGCgcaugCCAUCCu -3'
miRNA:   3'- aCCUa--UGGAUGGaga-------UCCGa----GGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 158822 0.66 0.956703
Target:  5'- gGGGgcaggGCCUgGCCg--GGGCugaccgcgUCCGCCCg -3'
miRNA:   3'- aCCUa----UGGA-UGGagaUCCG--------AGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 135696 0.66 0.956703
Target:  5'- cGGGUcucuuuagcgcaGCCUcgauuACCUCUGGGacuUCCuguCCCu -3'
miRNA:   3'- aCCUA------------UGGA-----UGGAGAUCCg--AGGu--GGG- -5'
33277 3' -54.6 NC_007605.1 + 94892 0.66 0.956703
Target:  5'- cGGc--CCUGCCUCc-GGCcCCAUCCc -3'
miRNA:   3'- aCCuauGGAUGGAGauCCGaGGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 92127 0.66 0.956703
Target:  5'- gGGGUGCCUcucacACCg--AGGC-CCGCUa -3'
miRNA:   3'- aCCUAUGGA-----UGGagaUCCGaGGUGGg -5'
33277 3' -54.6 NC_007605.1 + 135418 0.66 0.956703
Target:  5'- cUGG-UACCUGCUUUaccGGGC-CCugGCCCg -3'
miRNA:   3'- -ACCuAUGGAUGGAGa--UCCGaGG--UGGG- -5'
33277 3' -54.6 NC_007605.1 + 135179 0.66 0.956703
Target:  5'- cGGuUACCggggcgcaggGCCUCUgccGGGaagcCCACCCg -3'
miRNA:   3'- aCCuAUGGa---------UGGAGA---UCCga--GGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 91449 0.66 0.956703
Target:  5'- aUGGAaggGCCUGauCCUCUuuGGCUgacacaccucUCGCCCc -3'
miRNA:   3'- -ACCUa--UGGAU--GGAGAu-CCGA----------GGUGGG- -5'
33277 3' -54.6 NC_007605.1 + 87849 0.66 0.956322
Target:  5'- cGGG-GCCUcgcauacuggcGCCUCUuuccgcuGGGcCUCCugCCg -3'
miRNA:   3'- aCCUaUGGA-----------UGGAGA-------UCC-GAGGugGG- -5'
33277 3' -54.6 NC_007605.1 + 53570 0.66 0.952796
Target:  5'- aGGG-GCCUggcgcuugggGCCUCggcuGGCUCCcaguauGCCCu -3'
miRNA:   3'- aCCUaUGGA----------UGGAGau--CCGAGG------UGGG- -5'
33277 3' -54.6 NC_007605.1 + 106671 0.66 0.952796
Target:  5'- gUGGugcagGCCUGCCagccgccgCUuggAGGCUCCcuggaGCCCc -3'
miRNA:   3'- -ACCua---UGGAUGGa-------GA---UCCGAGG-----UGGG- -5'
33277 3' -54.6 NC_007605.1 + 130431 0.66 0.952796
Target:  5'- cGGugacauuUGCCUcucuccacagcGCCUCUGGGCUaagGCCUg -3'
miRNA:   3'- aCCu------AUGGA-----------UGGAGAUCCGAgg-UGGG- -5'
33277 3' -54.6 NC_007605.1 + 51683 0.66 0.952796
Target:  5'- gGGggGCCUgGCCUCcuUAGGUuuggCgGCCCu -3'
miRNA:   3'- aCCuaUGGA-UGGAG--AUCCGa---GgUGGG- -5'
33277 3' -54.6 NC_007605.1 + 71514 0.66 0.952393
Target:  5'- aGGGUGCCUagagcACCg--AGGuCUCCAagagcucCCCg -3'
miRNA:   3'- aCCUAUGGA-----UGGagaUCC-GAGGU-------GGG- -5'
33277 3' -54.6 NC_007605.1 + 12470 0.66 0.951987
Target:  5'- gGGGUggcgaGCCUGCUgUCUcaggaggggccuGGCUCCGCCg -3'
miRNA:   3'- aCCUA-----UGGAUGG-AGAu-----------CCGAGGUGGg -5'
33277 3' -54.6 NC_007605.1 + 15539 0.66 0.951987
Target:  5'- gGGGUggcgaGCCUGCUgUCUcaggaggggccuGGCUCCGCCg -3'
miRNA:   3'- aCCUA-----UGGAUGG-AGAu-----------CCGAGGUGGg -5'
33277 3' -54.6 NC_007605.1 + 18608 0.66 0.951987
Target:  5'- gGGGUggcgaGCCUGCUgUCUcaggaggggccuGGCUCCGCCg -3'
miRNA:   3'- aCCUA-----UGGAUGG-AGAu-----------CCGAGGUGGg -5'
33277 3' -54.6 NC_007605.1 + 21677 0.66 0.951987
Target:  5'- gGGGUggcgaGCCUGCUgUCUcaggaggggccuGGCUCCGCCg -3'
miRNA:   3'- aCCUA-----UGGAUGG-AGAu-----------CCGAGGUGGg -5'
33277 3' -54.6 NC_007605.1 + 24746 0.66 0.951987
Target:  5'- gGGGUggcgaGCCUGCUgUCUcaggaggggccuGGCUCCGCCg -3'
miRNA:   3'- aCCUA-----UGGAUGG-AGAu-----------CCGAGGUGGg -5'
33277 3' -54.6 NC_007605.1 + 27815 0.66 0.951987
Target:  5'- gGGGUggcgaGCCUGCUgUCUcaggaggggccuGGCUCCGCCg -3'
miRNA:   3'- aCCUA-----UGGAUGG-AGAu-----------CCGAGGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.