miRNA display CGI


Results 1 - 20 of 161 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33287 5' -54.2 NC_007605.1 + 94277 0.66 0.964169
Target:  5'- gGGAAGAAaGUAUAGC-UACaUCACCAc -3'
miRNA:   3'- gCCUUCUUcCGUAUCGgAUG-GGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 159961 0.66 0.964169
Target:  5'- aGGAGGcgcuggcgGGGGCAaGGCUgACUCACCu -3'
miRNA:   3'- gCCUUC--------UUCCGUaUCGGaUGGGUGGu -5'
33287 5' -54.2 NC_007605.1 + 85651 0.66 0.964169
Target:  5'- cCGGAcccugguGAAGGCu--GCCaGCCCGCa- -3'
miRNA:   3'- -GCCUu------CUUCCGuauCGGaUGGGUGgu -5'
33287 5' -54.2 NC_007605.1 + 40281 0.66 0.964169
Target:  5'- aCGGggGAGGacCGcGGCCgAgCCACCAg -3'
miRNA:   3'- -GCCuuCUUCc-GUaUCGGaUgGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 91729 0.66 0.964169
Target:  5'- gGGAuagccgGGAAGGUAUGuuCCUGCCaaaGCCGg -3'
miRNA:   3'- gCCU------UCUUCCGUAUc-GGAUGGg--UGGU- -5'
33287 5' -54.2 NC_007605.1 + 2399 0.66 0.962809
Target:  5'- aCGGAAGGAGggccggcuucuauGCAccucgaagccaaacuGCCUGCCCAUCu -3'
miRNA:   3'- -GCCUUCUUC-------------CGUau-------------CGGAUGGGUGGu -5'
33287 5' -54.2 NC_007605.1 + 125708 0.66 0.960701
Target:  5'- cCGGGAGAucAGGacgagGGCCg--CCACCAa -3'
miRNA:   3'- -GCCUUCU--UCCgua--UCGGaugGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 80291 0.66 0.960701
Target:  5'- uGGGAGcauGGGuCGUgcuggAGCUgACCCACCGg -3'
miRNA:   3'- gCCUUCu--UCC-GUA-----UCGGaUGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 58106 0.66 0.960701
Target:  5'- aGGGAuuGGGCAaagaUAGCCcccacaagaaGCCCACCu -3'
miRNA:   3'- gCCUUcuUCCGU----AUCGGa---------UGGGUGGu -5'
33287 5' -54.2 NC_007605.1 + 107709 0.66 0.960701
Target:  5'- aGGAAGGAGGCc-AGCC-ACaCCuCCGu -3'
miRNA:   3'- gCCUUCUUCCGuaUCGGaUG-GGuGGU- -5'
33287 5' -54.2 NC_007605.1 + 105674 0.66 0.960701
Target:  5'- cCGGugccAGAAGGCc-GGCCUcGCCCGucCCAc -3'
miRNA:   3'- -GCCu---UCUUCCGuaUCGGA-UGGGU--GGU- -5'
33287 5' -54.2 NC_007605.1 + 40242 0.66 0.960701
Target:  5'- gGGGuccAGggGGC--AGCCgcgGCCCAgCGc -3'
miRNA:   3'- gCCU---UCuuCCGuaUCGGa--UGGGUgGU- -5'
33287 5' -54.2 NC_007605.1 + 82746 0.66 0.960701
Target:  5'- uCGGggGccugAGGGCAgGGCCUGCCa---- -3'
miRNA:   3'- -GCCuuC----UUCCGUaUCGGAUGGguggu -5'
33287 5' -54.2 NC_007605.1 + 136842 0.66 0.960701
Target:  5'- uGGAGGggGGCcaaagaGGCCcgGCaaGCCAa -3'
miRNA:   3'- gCCUUCuuCCGua----UCGGa-UGggUGGU- -5'
33287 5' -54.2 NC_007605.1 + 131829 0.66 0.960701
Target:  5'- aGGAAGGAGaGCAUgcgGGUUccaauugugACCCACCu -3'
miRNA:   3'- gCCUUCUUC-CGUA---UCGGa--------UGGGUGGu -5'
33287 5' -54.2 NC_007605.1 + 58880 0.66 0.960701
Target:  5'- uGGGcauGAGGGCAUccAGCCgcGCCC-CCu -3'
miRNA:   3'- gCCUu--CUUCCGUA--UCGGa-UGGGuGGu -5'
33287 5' -54.2 NC_007605.1 + 50411 0.66 0.960701
Target:  5'- uGGccuuuGGCAcgGGCCUggcACCCACCGc -3'
miRNA:   3'- gCCuucuuCCGUa-UCGGA---UGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 37740 0.66 0.960701
Target:  5'- gGGAAaAAGGUuUAGCUauUCCACCAa -3'
miRNA:   3'- gCCUUcUUCCGuAUCGGauGGGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 159857 0.66 0.960701
Target:  5'- gCGGuGGAGGGCugaaGGCggaCUGCgCCGCCGc -3'
miRNA:   3'- -GCCuUCUUCCGua--UCG---GAUG-GGUGGU- -5'
33287 5' -54.2 NC_007605.1 + 58307 0.66 0.958513
Target:  5'- aCGGGAGGgcugcuaucagcaccGGGCGUccccgccGCCUcCCCAUCAc -3'
miRNA:   3'- -GCCUUCU---------------UCCGUAu------CGGAuGGGUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.