Results 1 - 20 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33294 | 3' | -60.5 | NC_007605.1 | + | 164820 | 0.66 | 0.779789 |
Target: 5'- aCCCGGGAUgagaaagaccugccuUuGCCaGCCCUgGUC-CUCu -3' miRNA: 3'- -GGGCCCUA---------------AcCGG-CGGGGgUAGuGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 36334 | 0.66 | 0.776223 |
Target: 5'- uUgGGGAaaacacggGGgUGCCCCCAcCACUCc -3' miRNA: 3'- gGgCCCUaa------CCgGCGGGGGUaGUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 40006 | 0.66 | 0.767228 |
Target: 5'- gCUGGGGUccaggGGaccaCGCCCCCAcccugCAUUCc -3' miRNA: 3'- gGGCCCUAa----CCg---GCGGGGGUa----GUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 32226 | 0.66 | 0.767228 |
Target: 5'- cCCCGaGGGUgaGGCCcagcccccucccGCCCCUGUcCACUg -3' miRNA: 3'- -GGGC-CCUAa-CCGG------------CGGGGGUA-GUGAg -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 91936 | 0.66 | 0.767228 |
Target: 5'- cCUCGGuguGAgaGGCa-CCCCCAUCAUUCc -3' miRNA: 3'- -GGGCC---CUaaCCGgcGGGGGUAGUGAG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 23019 | 0.66 | 0.767228 |
Target: 5'- cCCCGaGGGUgaGGCCcagcccccucccGCCCCUGUcCACUg -3' miRNA: 3'- -GGGC-CCUAa-CCGG------------CGGGGGUA-GUGAg -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 26088 | 0.66 | 0.767228 |
Target: 5'- cCCCGaGGGUgaGGCCcagcccccucccGCCCCUGUcCACUg -3' miRNA: 3'- -GGGC-CCUAa-CCGG------------CGGGGGUA-GUGAg -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 29157 | 0.66 | 0.767228 |
Target: 5'- cCCCGaGGGUgaGGCCcagcccccucccGCCCCUGUcCACUg -3' miRNA: 3'- -GGGC-CCUAa-CCGG------------CGGGGGUA-GUGAg -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 38734 | 0.66 | 0.767228 |
Target: 5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3' miRNA: 3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 38984 | 0.66 | 0.767228 |
Target: 5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3' miRNA: 3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 16882 | 0.66 | 0.767228 |
Target: 5'- cCCCGaGGGUgaGGCCcagcccccucccGCCCCUGUcCACUg -3' miRNA: 3'- -GGGC-CCUAa-CCGG------------CGGGGGUA-GUGAg -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 13813 | 0.66 | 0.767228 |
Target: 5'- cCCCGaGGGUgaGGCCcagcccccucccGCCCCUGUcCACUg -3' miRNA: 3'- -GGGC-CCUAa-CCGG------------CGGGGGUA-GUGAg -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 39233 | 0.66 | 0.767228 |
Target: 5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3' miRNA: 3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 39358 | 0.66 | 0.767228 |
Target: 5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3' miRNA: 3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 39733 | 0.66 | 0.767228 |
Target: 5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3' miRNA: 3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 39858 | 0.66 | 0.767228 |
Target: 5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3' miRNA: 3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 39608 | 0.66 | 0.767228 |
Target: 5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3' miRNA: 3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 38609 | 0.66 | 0.767228 |
Target: 5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3' miRNA: 3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 38484 | 0.66 | 0.767228 |
Target: 5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3' miRNA: 3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5' |
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33294 | 3' | -60.5 | NC_007605.1 | + | 39483 | 0.66 | 0.767228 |
Target: 5'- aCCGGcGGccgcccGGCUGCCCCCGgagCGC-Ca -3' miRNA: 3'- gGGCC-CUaa----CCGGCGGGGGUa--GUGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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