miRNA display CGI


Results 1 - 20 of 232 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33295 3' -57.7 NC_007605.1 + 29108 0.66 0.896884
Target:  5'- gAGGGGuGGACGaGGCUGGGcccGGGAGccguGGa -3'
miRNA:   3'- -UCCCC-UCUGC-CUGGUCC---CCCUUuu--CC- -5'
33295 3' -57.7 NC_007605.1 + 13763 0.66 0.896884
Target:  5'- gAGGGGuGGACGaGGCUGGGcccGGGAGccguGGa -3'
miRNA:   3'- -UCCCC-UCUGC-CUGGUCC---CCCUUuu--CC- -5'
33295 3' -57.7 NC_007605.1 + 19901 0.66 0.896884
Target:  5'- gAGGGGuGGACGaGGCUGGGcccGGGAGccguGGa -3'
miRNA:   3'- -UCCCC-UCUGC-CUGGUCC---CCCUUuu--CC- -5'
33295 3' -57.7 NC_007605.1 + 26039 0.66 0.896884
Target:  5'- gAGGGGuGGACGaGGCUGGGcccGGGAGccguGGa -3'
miRNA:   3'- -UCCCC-UCUGC-CUGGUCC---CCCUUuu--CC- -5'
33295 3' -57.7 NC_007605.1 + 16832 0.66 0.896884
Target:  5'- gAGGGGuGGACGaGGCUGGGcccGGGAGccguGGa -3'
miRNA:   3'- -UCCCC-UCUGC-CUGGUCC---CCCUUuu--CC- -5'
33295 3' -57.7 NC_007605.1 + 22970 0.66 0.896884
Target:  5'- gAGGGGuGGACGaGGCUGGGcccGGGAGccguGGa -3'
miRNA:   3'- -UCCCC-UCUGC-CUGGUCC---CCCUUuu--CC- -5'
33295 3' -57.7 NC_007605.1 + 5931 0.66 0.896884
Target:  5'- gAGGGcuGGGCccgGGGCUAGGGGGAc---- -3'
miRNA:   3'- -UCCCc-UCUG---CCUGGUCCCCCUuuucc -5'
33295 3' -57.7 NC_007605.1 + 32176 0.66 0.896884
Target:  5'- gAGGGGuGGACGaGGCUGGGcccGGGAGccguGGa -3'
miRNA:   3'- -UCCCC-UCUGC-CUGGUCC---CCCUUuu--CC- -5'
33295 3' -57.7 NC_007605.1 + 35245 0.66 0.896884
Target:  5'- gAGGGGuGGACGaGGCUGGGcccGGGAGccguGGa -3'
miRNA:   3'- -UCCCC-UCUGC-CUGGUCC---CCCUUuu--CC- -5'
33295 3' -57.7 NC_007605.1 + 103546 0.66 0.893042
Target:  5'- cGGGGGAGAucauggcaucCGGcaagcaccaucagcCCGGGGGGAcacGGa -3'
miRNA:   3'- -UCCCCUCU----------GCCu-------------GGUCCCCCUuuuCC- -5'
33295 3' -57.7 NC_007605.1 + 123565 0.66 0.890438
Target:  5'- cGGGGAGA-GGGCCAGGcacaGGGc----- -3'
miRNA:   3'- uCCCCUCUgCCUGGUCC----CCCuuuucc -5'
33295 3' -57.7 NC_007605.1 + 58087 0.66 0.890438
Target:  5'- cGGGGccGCGGagGCCGGGGccgcGGAGGccGGGg -3'
miRNA:   3'- uCCCCucUGCC--UGGUCCC----CCUUU--UCC- -5'
33295 3' -57.7 NC_007605.1 + 71116 0.66 0.890438
Target:  5'- uAGGGucaGAGA-GG-CCAGGGGGcu-GGGc -3'
miRNA:   3'- -UCCC---CUCUgCCuGGUCCCCCuuuUCC- -5'
33295 3' -57.7 NC_007605.1 + 151297 0.66 0.883778
Target:  5'- gAGGGGcAGgcuGCGGccgcCCAGGGGGGc---- -3'
miRNA:   3'- -UCCCC-UC---UGCCu---GGUCCCCCUuuucc -5'
33295 3' -57.7 NC_007605.1 + 139463 0.66 0.883778
Target:  5'- uGGGGAGGgGGGgUGGGuacGGGAGAguuuGGGc -3'
miRNA:   3'- uCCCCUCUgCCUgGUCC---CCCUUU----UCC- -5'
33295 3' -57.7 NC_007605.1 + 96212 0.66 0.883778
Target:  5'- gAGGGGcaggagcaggaGGAgGGGCaggAGGGGcAGGAGGg -3'
miRNA:   3'- -UCCCC-----------UCUgCCUGg--UCCCCcUUUUCC- -5'
33295 3' -57.7 NC_007605.1 + 143490 0.66 0.882421
Target:  5'- uGGGGuAGGCGGAgccUCAGGaGGGuccccuccauAGGg -3'
miRNA:   3'- uCCCC-UCUGCCU---GGUCC-CCCuuu-------UCC- -5'
33295 3' -57.7 NC_007605.1 + 40674 0.66 0.882421
Target:  5'- uGGGGuAGGCGGAgccUCAGGaGGGuccccuccauAGGg -3'
miRNA:   3'- uCCCC-UCUGCCU---GGUCC-CCCuuu-------UCC- -5'
33295 3' -57.7 NC_007605.1 + 168749 0.66 0.876908
Target:  5'- gAGGaGGAGAaGGAgagcaaggcCUAGGGaagaGGAGAGGGg -3'
miRNA:   3'- -UCC-CCUCUgCCU---------GGUCCC----CCUUUUCC- -5'
33295 3' -57.7 NC_007605.1 + 133120 0.66 0.876908
Target:  5'- gAGcGGGAGGCcgaaaGGGCCAGGucGGAGcgguGGGa -3'
miRNA:   3'- -UC-CCCUCUG-----CCUGGUCCc-CCUUu---UCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.