miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33297 3' -65.3 NC_007605.1 + 2504 0.66 0.577052
Target:  5'- cCCG-GCCaccagaaggGCCCUCUGGaaGC-CCgCCGc -3'
miRNA:   3'- -GGCuCGG---------CGGGAGACCggCGuGG-GGC- -5'
33297 3' -65.3 NC_007605.1 + 54043 0.66 0.577052
Target:  5'- uCCaGGCUcCCCUCgaGGCCGCccugGCCCgGg -3'
miRNA:   3'- -GGcUCGGcGGGAGa-CCGGCG----UGGGgC- -5'
33297 3' -65.3 NC_007605.1 + 60289 0.66 0.577052
Target:  5'- gCCGuGGCCaggGCCCacCUGGCgGCGgcgUCCCGg -3'
miRNA:   3'- -GGC-UCGG---CGGGa-GACCGgCGU---GGGGC- -5'
33297 3' -65.3 NC_007605.1 + 171042 0.66 0.566768
Target:  5'- gCCGGGggcgcgaCCGCCuCUCUGuccCCGC-CCCCu -3'
miRNA:   3'- -GGCUC-------GGCGG-GAGACc--GGCGuGGGGc -5'
33297 3' -65.3 NC_007605.1 + 170520 0.66 0.566768
Target:  5'- gCCGGGggcgcgaCCGCCuCUCUGuccCCGC-CCCCu -3'
miRNA:   3'- -GGCUC-------GGCGG-GAGACc--GGCGuGGGGc -5'
33297 3' -65.3 NC_007605.1 + 169982 0.66 0.566768
Target:  5'- gCCGGGggcgcgaCCGCCuCUCUGuccCCGC-CCCCu -3'
miRNA:   3'- -GGCUC-------GGCGG-GAGACc--GGCGuGGGGc -5'
33297 3' -65.3 NC_007605.1 + 171580 0.66 0.566768
Target:  5'- gCCGGGggcgcgaCCGCCuCUCUGuccCCGC-CCCCu -3'
miRNA:   3'- -GGCUC-------GGCGG-GAGACc--GGCGuGGGGc -5'
33297 3' -65.3 NC_007605.1 + 171471 0.66 0.564903
Target:  5'- gCGAcccuGCC-CCCUCaucacggucacgcaUGGCUGCGCCCgCGc -3'
miRNA:   3'- gGCU----CGGcGGGAG--------------ACCGGCGUGGG-GC- -5'
33297 3' -65.3 NC_007605.1 + 169873 0.66 0.564903
Target:  5'- gCGAcccuGCC-CCCUCaucacggucacgcaUGGCUGCGCCCgCGc -3'
miRNA:   3'- gGCU----CGGcGGGAG--------------ACCGGCGUGGG-GC- -5'
33297 3' -65.3 NC_007605.1 + 170411 0.66 0.564903
Target:  5'- gCGAcccuGCC-CCCUCaucacggucacgcaUGGCUGCGCCCgCGc -3'
miRNA:   3'- gGCU----CGGcGGGAG--------------ACCGGCGUGGG-GC- -5'
33297 3' -65.3 NC_007605.1 + 170933 0.66 0.564903
Target:  5'- gCGAcccuGCC-CCCUCaucacggucacgcaUGGCUGCGCCCgCGc -3'
miRNA:   3'- gGCU----CGGcGGGAG--------------ACCGGCGUGGG-GC- -5'
33297 3' -65.3 NC_007605.1 + 159682 0.66 0.549119
Target:  5'- aCCGcGUCGCCCgagGaGCUGUagACCCCGc -3'
miRNA:   3'- -GGCuCGGCGGGagaC-CGGCG--UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 50567 0.66 0.548195
Target:  5'- gCCGGcGcCCGUCCUCgggGGCagcccacCGCGgCCCCGc -3'
miRNA:   3'- -GGCU-C-GGCGGGAGa--CCG-------GCGU-GGGGC- -5'
33297 3' -65.3 NC_007605.1 + 124178 0.66 0.543581
Target:  5'- uCUGAcCUGCCggCUgUGGCCGCaggggucgaggaucaGCCCCGg -3'
miRNA:   3'- -GGCUcGGCGG--GAgACCGGCG---------------UGGGGC- -5'
33297 3' -65.3 NC_007605.1 + 50726 0.66 0.539898
Target:  5'- uCCGgcuuGGCCGCCC-C-GGCgCaCACCCCa -3'
miRNA:   3'- -GGC----UCGGCGGGaGaCCG-GcGUGGGGc -5'
33297 3' -65.3 NC_007605.1 + 50368 0.66 0.536225
Target:  5'- gUGGGCUGCCCccgaggacgggcgCcGGCCGCcagcGCCCCc -3'
miRNA:   3'- gGCUCGGCGGGa------------GaCCGGCG----UGGGGc -5'
33297 3' -65.3 NC_007605.1 + 35101 0.66 0.530731
Target:  5'- cCCGGGCCauccccGCCCccCUGuGUC-CACCCCa -3'
miRNA:   3'- -GGCUCGG------CGGGa-GAC-CGGcGUGGGGc -5'
33297 3' -65.3 NC_007605.1 + 25895 0.66 0.530731
Target:  5'- cCCGGGCCauccccGCCCccCUGuGUC-CACCCCa -3'
miRNA:   3'- -GGCUCGG------CGGGa-GAC-CGGcGUGGGGc -5'
33297 3' -65.3 NC_007605.1 + 19757 0.66 0.530731
Target:  5'- cCCGGGCCauccccGCCCccCUGuGUC-CACCCCa -3'
miRNA:   3'- -GGCUCGG------CGGGa-GAC-CGGcGUGGGGc -5'
33297 3' -65.3 NC_007605.1 + 22826 0.66 0.530731
Target:  5'- cCCGGGCCauccccGCCCccCUGuGUC-CACCCCa -3'
miRNA:   3'- -GGCUCGG------CGGGa-GAC-CGGcGUGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.