miRNA display CGI


Results 1 - 20 of 317 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33300 5' -62.7 NC_007605.1 + 170004 0.66 0.705919
Target:  5'- uGGGGCAuggGGGGCCgCGcauuCCUGGaaaaaguggaGGg -3'
miRNA:   3'- -CCCCGUua-CCUCGGgGCu---GGGCCg---------CC- -5'
33300 5' -62.7 NC_007605.1 + 88594 0.66 0.705919
Target:  5'- ------uUGGAGCCCgUGGgCCGGCGGc -3'
miRNA:   3'- ccccguuACCUCGGG-GCUgGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 132844 0.66 0.705919
Target:  5'- uGGGCAGUcaGGGCCUgGAaguCuuGGCGGc -3'
miRNA:   3'- cCCCGUUAc-CUCGGGgCU---GggCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 169467 0.66 0.705919
Target:  5'- uGGGGCAuggGGGGCCgCGcauuCCUGGaaaaaguggaGGg -3'
miRNA:   3'- -CCCCGUua-CCUCGGgGCu---GGGCCg---------CC- -5'
33300 5' -62.7 NC_007605.1 + 170527 0.66 0.705919
Target:  5'- uGGGGCAuggGGGGCCgCGcauuCCUGGaaaaaguggaGGg -3'
miRNA:   3'- -CCCCGUua-CCUCGGgGCu---GGGCCg---------CC- -5'
33300 5' -62.7 NC_007605.1 + 171064 0.66 0.705919
Target:  5'- uGGGGCAuggGGGGCCgCGcauuCCUGGaaaaaguggaGGg -3'
miRNA:   3'- -CCCCGUua-CCUCGGgGCu---GGGCCg---------CC- -5'
33300 5' -62.7 NC_007605.1 + 59335 0.66 0.697458
Target:  5'- gGGGGCAAagccagcgcacccggGGAaccgGCCCCGugCgCGGaaucaGGa -3'
miRNA:   3'- -CCCCGUUa--------------CCU----CGGGGCugG-GCCg----CC- -5'
33300 5' -62.7 NC_007605.1 + 38586 0.66 0.696515
Target:  5'- cGGaGCGccaGGAaccccggcuGCCCCagGACCUGGCGGc -3'
miRNA:   3'- cCC-CGUua-CCU---------CGGGG--CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 38711 0.66 0.696515
Target:  5'- cGGaGCGccaGGAaccccggcuGCCCCagGACCUGGCGGc -3'
miRNA:   3'- cCC-CGUua-CCU---------CGGGG--CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 39086 0.66 0.696515
Target:  5'- cGGaGCGccaGGAaccccggcuGCCCCagGACCUGGCGGc -3'
miRNA:   3'- cCC-CGUua-CCU---------CGGGG--CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 39335 0.66 0.696515
Target:  5'- cGGaGCGccaGGAaccccggcuGCCCCagGACCUGGCGGc -3'
miRNA:   3'- cCC-CGUua-CCU---------CGGGG--CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 38961 0.66 0.696515
Target:  5'- cGGaGCGccaGGAaccccggcuGCCCCagGACCUGGCGGc -3'
miRNA:   3'- cCC-CGUua-CCU---------CGGGG--CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 39710 0.66 0.696515
Target:  5'- cGGaGCGccaGGAaccccggcuGCCCCagGACCUGGCGGc -3'
miRNA:   3'- cCC-CGUua-CCU---------CGGGG--CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 138928 0.66 0.696515
Target:  5'- cGGGCcuc--AGCCaUCGGCCCGGgGGg -3'
miRNA:   3'- cCCCGuuaccUCGG-GGCUGGGCCgCC- -5'
33300 5' -62.7 NC_007605.1 + 100902 0.66 0.696515
Target:  5'- gGGGGC---GGGGUgaccauguuuaCCUG-CCCGGUGGa -3'
miRNA:   3'- -CCCCGuuaCCUCG-----------GGGCuGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 39835 0.66 0.696515
Target:  5'- cGGaGCGccaGGAaccccggcuGCCCCagGACCUGGCGGc -3'
miRNA:   3'- cCC-CGUua-CCU---------CGGGG--CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 39210 0.66 0.696515
Target:  5'- cGGaGCGccaGGAaccccggcuGCCCCagGACCUGGCGGc -3'
miRNA:   3'- cCC-CGUua-CCU---------CGGGG--CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 39460 0.66 0.696515
Target:  5'- cGGaGCGccaGGAaccccggcuGCCCCagGACCUGGCGGc -3'
miRNA:   3'- cCC-CGUua-CCU---------CGGGG--CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 38836 0.66 0.696515
Target:  5'- cGGaGCGccaGGAaccccggcuGCCCCagGACCUGGCGGc -3'
miRNA:   3'- cCC-CGUua-CCU---------CGGGG--CUGGGCCGCC- -5'
33300 5' -62.7 NC_007605.1 + 39585 0.66 0.696515
Target:  5'- cGGaGCGccaGGAaccccggcuGCCCCagGACCUGGCGGc -3'
miRNA:   3'- cCC-CGUua-CCU---------CGGGG--CUGGGCCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.