miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33303 5' -55.4 NC_007605.1 + 2297 0.66 0.953009
Target:  5'- uUCCGcgGACcaugUGGAAgGCCUUGCcauccagucUGGUc -3'
miRNA:   3'- -GGGCuaCUG----ACCUUgUGGGACG---------ACCG- -5'
33303 5' -55.4 NC_007605.1 + 16102 0.66 0.953009
Target:  5'- gCCCGAggGGCucUGGggUGCCCgagguccCUGGUu -3'
miRNA:   3'- -GGGCUa-CUG--ACCuuGUGGGac-----GACCG- -5'
33303 5' -55.4 NC_007605.1 + 19170 0.66 0.953009
Target:  5'- gCCCGAggGGCucUGGggUGCCCgagguccCUGGUu -3'
miRNA:   3'- -GGGCUa-CUG--ACCuuGUGGGac-----GACCG- -5'
33303 5' -55.4 NC_007605.1 + 13033 0.66 0.953009
Target:  5'- gCCCGAggGGCucUGGggUGCCCgagguccCUGGUu -3'
miRNA:   3'- -GGGCUa-CUG--ACCuuGUGGGac-----GACCG- -5'
33303 5' -55.4 NC_007605.1 + 31446 0.66 0.953009
Target:  5'- gCCCGAggGGCucUGGggUGCCCgagguccCUGGUu -3'
miRNA:   3'- -GGGCUa-CUG--ACCuuGUGGGac-----GACCG- -5'
33303 5' -55.4 NC_007605.1 + 50849 0.66 0.953009
Target:  5'- gCCGucgGGCUGcGAccccguGCGCCCgUGgUGGCc -3'
miRNA:   3'- gGGCua-CUGAC-CU------UGUGGG-ACgACCG- -5'
33303 5' -55.4 NC_007605.1 + 25308 0.66 0.953009
Target:  5'- gCCCGAggGGCucUGGggUGCCCgagguccCUGGUu -3'
miRNA:   3'- -GGGCUa-CUG--ACCuuGUGGGac-----GACCG- -5'
33303 5' -55.4 NC_007605.1 + 34515 0.66 0.953009
Target:  5'- gCCCGAggGGCucUGGggUGCCCgagguccCUGGUu -3'
miRNA:   3'- -GGGCUa-CUG--ACCuuGUGGGac-----GACCG- -5'
33303 5' -55.4 NC_007605.1 + 92393 0.66 0.953009
Target:  5'- gCCUauGGUGGCaGGAAucauCACCCgguUGCUGGg -3'
miRNA:   3'- -GGG--CUACUGaCCUU----GUGGG---ACGACCg -5'
33303 5' -55.4 NC_007605.1 + 28377 0.66 0.953009
Target:  5'- gCCCGAggGGCucUGGggUGCCCgagguccCUGGUu -3'
miRNA:   3'- -GGGCUa-CUG--ACCuuGUGGGac-----GACCG- -5'
33303 5' -55.4 NC_007605.1 + 110754 0.66 0.953009
Target:  5'- aUCUGA--ACUGGGGCAUaaaCaggGCUGGCa -3'
miRNA:   3'- -GGGCUacUGACCUUGUGg--Ga--CGACCG- -5'
33303 5' -55.4 NC_007605.1 + 61059 0.66 0.953009
Target:  5'- cUCCGAUGcCUGGGAguCCCccCaGGCg -3'
miRNA:   3'- -GGGCUACuGACCUUguGGGacGaCCG- -5'
33303 5' -55.4 NC_007605.1 + 22239 0.66 0.953009
Target:  5'- gCCCGAggGGCucUGGggUGCCCgagguccCUGGUu -3'
miRNA:   3'- -GGGCUa-CUG--ACCuuGUGGGac-----GACCG- -5'
33303 5' -55.4 NC_007605.1 + 52485 0.66 0.948941
Target:  5'- uCCCGGaGGCUGGAcuccugacCAgCCUGUaGGUg -3'
miRNA:   3'- -GGGCUaCUGACCUu-------GUgGGACGaCCG- -5'
33303 5' -55.4 NC_007605.1 + 132091 0.66 0.944646
Target:  5'- gCUGGUGGCUGG-GCucCCCUG--GGCa -3'
miRNA:   3'- gGGCUACUGACCuUGu-GGGACgaCCG- -5'
33303 5' -55.4 NC_007605.1 + 108820 0.66 0.944646
Target:  5'- aUCCGuaaGACcuuGAGCACCgCgGCUGGCu -3'
miRNA:   3'- -GGGCua-CUGac-CUUGUGG-GaCGACCG- -5'
33303 5' -55.4 NC_007605.1 + 135843 0.66 0.944646
Target:  5'- aCUGAgccGACcGGAGCAUCCgGCaGGUg -3'
miRNA:   3'- gGGCUa--CUGaCCUUGUGGGaCGaCCG- -5'
33303 5' -55.4 NC_007605.1 + 24831 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 34037 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5'
33303 5' -55.4 NC_007605.1 + 21762 0.66 0.944203
Target:  5'- gCCCGggGAaguggaggGGGAuCGCCCgggucucUGUUGGCa -3'
miRNA:   3'- -GGGCuaCUga------CCUU-GUGGG-------ACGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.