miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33314 5' -62.4 NC_007605.1 + 83010 0.66 0.691613
Target:  5'- aGCAAGccgauGCCGGGGGgGCAucuGGcuCCGAg -3'
miRNA:   3'- cCGUUC-----CGGCCCCUgCGU---CCucGGCU- -5'
33314 5' -62.4 NC_007605.1 + 143131 0.66 0.691613
Target:  5'- cGGCGGGGauGGGGguGCGCucccaGGCCGGa -3'
miRNA:   3'- -CCGUUCCggCCCC--UGCGucc--UCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 55543 0.66 0.691613
Target:  5'- gGGCAA--CCGGcuGACGCuGGAGCCa- -3'
miRNA:   3'- -CCGUUccGGCCc-CUGCGuCCUCGGcu -5'
33314 5' -62.4 NC_007605.1 + 95906 0.66 0.691613
Target:  5'- gGGCAggagGGGCaggaGGGGcaggagGgGCAGGAGCagGAg -3'
miRNA:   3'- -CCGU----UCCGg---CCCC------UgCGUCCUCGg-CU- -5'
33314 5' -62.4 NC_007605.1 + 35050 0.66 0.682019
Target:  5'- uGGgGAGGCaagcugaGGGGGCucggGUGGGAGgCGGg -3'
miRNA:   3'- -CCgUUCCGg------CCCCUG----CGUCCUCgGCU- -5'
33314 5' -62.4 NC_007605.1 + 136555 0.66 0.682019
Target:  5'- gGGCccgcGGgCGGGGACcCGGGuGCCu- -3'
miRNA:   3'- -CCGuu--CCgGCCCCUGcGUCCuCGGcu -5'
33314 5' -62.4 NC_007605.1 + 22774 0.66 0.682019
Target:  5'- uGGgGAGGCaagcugaGGGGGCucggGUGGGAGgCGGg -3'
miRNA:   3'- -CCgUUCCGg------CCCCUG----CGUCCUCgGCU- -5'
33314 5' -62.4 NC_007605.1 + 19705 0.66 0.682019
Target:  5'- uGGgGAGGCaagcugaGGGGGCucggGUGGGAGgCGGg -3'
miRNA:   3'- -CCgUUCCGg------CCCCUG----CGUCCUCgGCU- -5'
33314 5' -62.4 NC_007605.1 + 16636 0.66 0.682019
Target:  5'- uGGgGAGGCaagcugaGGGGGCucggGUGGGAGgCGGg -3'
miRNA:   3'- -CCgUUCCGg------CCCCUG----CGUCCUCgGCU- -5'
33314 5' -62.4 NC_007605.1 + 25843 0.66 0.682019
Target:  5'- uGGgGAGGCaagcugaGGGGGCucggGUGGGAGgCGGg -3'
miRNA:   3'- -CCgUUCCGg------CCCCUG----CGUCCUCgGCU- -5'
33314 5' -62.4 NC_007605.1 + 53942 0.66 0.682019
Target:  5'- uGCGAGGCCgugcGGGGucuuucCGaAGGAGCCc- -3'
miRNA:   3'- cCGUUCCGG----CCCCu-----GCgUCCUCGGcu -5'
33314 5' -62.4 NC_007605.1 + 95107 0.66 0.682019
Target:  5'- aGCAugucuGCUGGGGcuCGCGGGAugggGCCGGa -3'
miRNA:   3'- cCGUuc---CGGCCCCu-GCGUCCU----CGGCU- -5'
33314 5' -62.4 NC_007605.1 + 28912 0.66 0.682019
Target:  5'- uGGgGAGGCaagcugaGGGGGCucggGUGGGAGgCGGg -3'
miRNA:   3'- -CCgUUCCGg------CCCCUG----CGUCCUCgGCU- -5'
33314 5' -62.4 NC_007605.1 + 13567 0.66 0.682019
Target:  5'- uGGgGAGGCaagcugaGGGGGCucggGUGGGAGgCGGg -3'
miRNA:   3'- -CCgUUCCGg------CCCCUG----CGUCCUCgGCU- -5'
33314 5' -62.4 NC_007605.1 + 31981 0.66 0.682019
Target:  5'- uGGgGAGGCaagcugaGGGGGCucggGUGGGAGgCGGg -3'
miRNA:   3'- -CCgUUCCGg------CCCCUG----CGUCCUCgGCU- -5'
33314 5' -62.4 NC_007605.1 + 67679 0.66 0.672387
Target:  5'- cGGCu-GGCCGccguGGccaACGCAGGcacGGCCGGg -3'
miRNA:   3'- -CCGuuCCGGCc---CC---UGCGUCC---UCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 123319 0.66 0.672387
Target:  5'- uGCAgcugGGGCCaGGGGAgucgGCAGGuuacccaccauuAGCCGGu -3'
miRNA:   3'- cCGU----UCCGG-CCCCUg---CGUCC------------UCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 50561 0.66 0.672387
Target:  5'- gGGCGGGuGCCugGGGGAU--GGGAaaGCCGGa -3'
miRNA:   3'- -CCGUUC-CGG--CCCCUGcgUCCU--CGGCU- -5'
33314 5' -62.4 NC_007605.1 + 85324 0.66 0.672387
Target:  5'- uGGCAcuaaGGGCUccugcuGGucaGCAGGGGCCGAc -3'
miRNA:   3'- -CCGU----UCCGGcc----CCug-CGUCCUCGGCU- -5'
33314 5' -62.4 NC_007605.1 + 40176 0.66 0.662726
Target:  5'- aGCAGGGa-GGGGGCGUcccGGGAccccagcccccaGCCGGc -3'
miRNA:   3'- cCGUUCCggCCCCUGCG---UCCU------------CGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.