Results 1 - 20 of 436 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33327 | 3' | -61.3 | NC_007605.1 | + | 77184 | 0.66 | 0.745501 |
Target: 5'- cCCGGGAGCGGGAGCgggcacGUCgGGuGGCgUUg -3' miRNA: 3'- -GGCCCUCGUUCUCG------CGGgUC-UCGgGG- -5' |
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33327 | 3' | -61.3 | NC_007605.1 | + | 143277 | 0.66 | 0.745501 |
Target: 5'- cCCGGuGGGCcacccGGcCGCCCcccGAGCUCCa -3' miRNA: 3'- -GGCC-CUCGuuc--UC-GCGGGu--CUCGGGG- -5' |
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33327 | 3' | -61.3 | NC_007605.1 | + | 142666 | 0.66 | 0.745501 |
Target: 5'- cCCGGuGGGCcacccGGcCGCCCcccGAGCUCCa -3' miRNA: 3'- -GGCC-CUCGuuc--UC-GCGGGu--CUCGGGG- -5' |
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33327 | 3' | -61.3 | NC_007605.1 | + | 133959 | 0.66 | 0.745501 |
Target: 5'- gUGGGAGCGGGAcuacUGCCCAcgacGGCCgCg -3' miRNA: 3'- gGCCCUCGUUCUc---GCGGGUc---UCGGgG- -5' |
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33327 | 3' | -61.3 | NC_007605.1 | + | 169565 | 0.66 | 0.745501 |
Target: 5'- gCGGGcGGCGGGgggucGGgGUCCGcGGGCUCCg -3' miRNA: 3'- gGCCC-UCGUUC-----UCgCGGGU-CUCGGGG- -5' |
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33327 | 3' | -61.3 | NC_007605.1 | + | 142054 | 0.66 | 0.745501 |
Target: 5'- cCCGGuGGGCcacccGGcCGCCCcccGAGCUCCa -3' miRNA: 3'- -GGCC-CUCGuuc--UC-GCGGGu--CUCGGGG- -5' |
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33327 | 3' | -61.3 | NC_007605.1 | + | 142971 | 0.66 | 0.745501 |
Target: 5'- cCCGGuGGGCcacccGGcCGCCCcccGAGCUCCa -3' miRNA: 3'- -GGCC-CUCGuuc--UC-GCGGGu--CUCGGGG- -5' |
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33327 | 3' | -61.3 | NC_007605.1 | + | 40083 | 0.66 | 0.745501 |
Target: 5'- aCCGGcGGau-GcAGCGaCCCccagaGGAGCCCCa -3' miRNA: 3'- -GGCCcUCguuC-UCGC-GGG-----UCUCGGGG- -5' |
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33327 | 3' | -61.3 | NC_007605.1 | + | 142156 | 0.66 | 0.745501 |
Target: 5'- cCCGGuGGGCcacccGGcCGCCCcccGAGCUCCa -3' miRNA: 3'- -GGCC-CUCGuuc--UC-GCGGGu--CUCGGGG- -5' |
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33327 | 3' | -61.3 | NC_007605.1 | + | 142768 | 0.66 | 0.745501 |
Target: 5'- cCCGGuGGGCcacccGGcCGCCCcccGAGCUCCa -3' miRNA: 3'- -GGCC-CUCGuuc--UC-GCGGGu--CUCGGGG- -5' |
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33327 | 3' | -61.3 | NC_007605.1 | + | 142564 | 0.66 | 0.745501 |
Target: 5'- cCCGGuGGGCcacccGGcCGCCCcccGAGCUCCa -3' miRNA: 3'- -GGCC-CUCGuuc--UC-GCGGGu--CUCGGGG- -5' |
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33327 | 3' | -61.3 | NC_007605.1 | + | 142360 | 0.66 | 0.745501 |
Target: 5'- cCCGGuGGGCcacccGGcCGCCCcccGAGCUCCa -3' miRNA: 3'- -GGCC-CUCGuuc--UC-GCGGGu--CUCGGGG- -5' |
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33327 | 3' | -61.3 | NC_007605.1 | + | 170625 | 0.66 | 0.745501 |
Target: 5'- gCGGGcGGCGGGgggucGGgGUCCGcGGGCUCCg -3' miRNA: 3'- gGCCC-UCGUUC-----UCgCGGGU-CUCGGGG- -5' |
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33327 | 3' | -61.3 | NC_007605.1 | + | 143175 | 0.66 | 0.745501 |
Target: 5'- cCCGGuGGGCcacccGGcCGCCCcccGAGCUCCa -3' miRNA: 3'- -GGCC-CUCGuuc--UC-GCGGGu--CUCGGGG- -5' |
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33327 | 3' | -61.3 | NC_007605.1 | + | 171162 | 0.66 | 0.745501 |
Target: 5'- gCGGGcGGCGGGgggucGGgGUCCGcGGGCUCCg -3' miRNA: 3'- gGCCC-UCGUUC-----UCgCGGGU-CUCGGGG- -5' |
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33327 | 3' | -61.3 | NC_007605.1 | + | 142462 | 0.66 | 0.745501 |
Target: 5'- cCCGGuGGGCcacccGGcCGCCCcccGAGCUCCa -3' miRNA: 3'- -GGCC-CUCGuuc--UC-GCGGGu--CUCGGGG- -5' |
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33327 | 3' | -61.3 | NC_007605.1 | + | 143073 | 0.66 | 0.745501 |
Target: 5'- cCCGGuGGGCcacccGGcCGCCCcccGAGCUCCa -3' miRNA: 3'- -GGCC-CUCGuuc--UC-GCGGGu--CUCGGGG- -5' |
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33327 | 3' | -61.3 | NC_007605.1 | + | 170102 | 0.66 | 0.745501 |
Target: 5'- gCGGGcGGCGGGgggucGGgGUCCGcGGGCUCCg -3' miRNA: 3'- gGCCC-UCGUUC-----UCgCGGGU-CUCGGGG- -5' |
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33327 | 3' | -61.3 | NC_007605.1 | + | 140933 | 0.66 | 0.745501 |
Target: 5'- cCCGGuGGGCcacccGGcCGCCCcccGAGCUCCa -3' miRNA: 3'- -GGCC-CUCGuuc--UC-GCGGGu--CUCGGGG- -5' |
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33327 | 3' | -61.3 | NC_007605.1 | + | 142258 | 0.66 | 0.745501 |
Target: 5'- cCCGGuGGGCcacccGGcCGCCCcccGAGCUCCa -3' miRNA: 3'- -GGCC-CUCGuuc--UC-GCGGGu--CUCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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