miRNA display CGI


Results 1 - 20 of 210 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33351 3' -52.4 NC_007605.1 + 80122 0.66 0.991978
Target:  5'- cCCAgccGGAucuCcCUGGGCGAGAAG-CCa -3'
miRNA:   3'- -GGU---CCUuguGcGACUCGCUCUUCuGG- -5'
33351 3' -52.4 NC_007605.1 + 115430 0.66 0.991978
Target:  5'- uCCGGGGcaGCGCcGguggggaaGGCGGcGGAGGCCg -3'
miRNA:   3'- -GGUCCUugUGCGaC--------UCGCU-CUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 53872 0.66 0.991978
Target:  5'- aCAGGGGCu--UUGGGCGGGGAGGa- -3'
miRNA:   3'- gGUCCUUGugcGACUCGCUCUUCUgg -5'
33351 3' -52.4 NC_007605.1 + 105668 0.66 0.991978
Target:  5'- gCGGGAAgGCgGCgagggaGGGgGGGAGGACg -3'
miRNA:   3'- gGUCCUUgUG-CGa-----CUCgCUCUUCUGg -5'
33351 3' -52.4 NC_007605.1 + 100392 0.66 0.991978
Target:  5'- gCUGGGAugGaGCUGGGCGAacugccgcugGAGGuuGCCu -3'
miRNA:   3'- -GGUCCUugUgCGACUCGCU----------CUUC--UGG- -5'
33351 3' -52.4 NC_007605.1 + 104008 0.66 0.991978
Target:  5'- -gGGGAAUAUGUUGAGguGGucGACCu -3'
miRNA:   3'- ggUCCUUGUGCGACUCgcUCuuCUGG- -5'
33351 3' -52.4 NC_007605.1 + 17954 0.66 0.991869
Target:  5'- aCAGGAAcCugGggcuaguCUGGGUGGGAuuAGGCUg -3'
miRNA:   3'- gGUCCUU-GugC-------GACUCGCUCU--UCUGG- -5'
33351 3' -52.4 NC_007605.1 + 96529 0.66 0.991535
Target:  5'- gCAGGAGCAgGagguggaggccgGGGuCGAGGAGGCa -3'
miRNA:   3'- gGUCCUUGUgCga----------CUC-GCUCUUCUGg -5'
33351 3' -52.4 NC_007605.1 + 84621 0.66 0.990835
Target:  5'- gCCAGGcuCuuGCUGcGUGgguggucgcuGGAGGACCa -3'
miRNA:   3'- -GGUCCuuGugCGACuCGC----------UCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 60328 0.66 0.990835
Target:  5'- --uGGAGCACGCccugGAGCuGGGAuacaGCCu -3'
miRNA:   3'- gguCCUUGUGCGa---CUCG-CUCUuc--UGG- -5'
33351 3' -52.4 NC_007605.1 + 86782 0.66 0.990835
Target:  5'- gCCAGG-AUugGCUGGGagauguuAGAAG-CCa -3'
miRNA:   3'- -GGUCCuUGugCGACUCgc-----UCUUCuGG- -5'
33351 3' -52.4 NC_007605.1 + 105594 0.66 0.990835
Target:  5'- cCCAGGAGgGCGUcugccagGGGCGucccaGAGACUc -3'
miRNA:   3'- -GGUCCUUgUGCGa------CUCGCuc---UUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 62340 0.66 0.990835
Target:  5'- gCCGuGGAGCugGUgGAGCacagugGGGGcgGGGCCg -3'
miRNA:   3'- -GGU-CCUUGugCGaCUCG------CUCU--UCUGG- -5'
33351 3' -52.4 NC_007605.1 + 82327 0.66 0.990469
Target:  5'- cUCAGGuaccAACGgccccuccaucgguUGCUGAGgGAGAaaauGGGCCg -3'
miRNA:   3'- -GGUCC----UUGU--------------GCGACUCgCUCU----UCUGG- -5'
33351 3' -52.4 NC_007605.1 + 28539 0.66 0.989569
Target:  5'- gCCGGGGucccuccgGCugGcCUGGGaccCGGGGAGGCa -3'
miRNA:   3'- -GGUCCU--------UGugC-GACUC---GCUCUUCUGg -5'
33351 3' -52.4 NC_007605.1 + 31608 0.66 0.989569
Target:  5'- gCCGGGGucccuccgGCugGcCUGGGaccCGGGGAGGCa -3'
miRNA:   3'- -GGUCCU--------UGugC-GACUC---GCUCUUCUGg -5'
33351 3' -52.4 NC_007605.1 + 25470 0.66 0.989569
Target:  5'- gCCGGGGucccuccgGCugGcCUGGGaccCGGGGAGGCa -3'
miRNA:   3'- -GGUCCU--------UGugC-GACUC---GCUCUUCUGg -5'
33351 3' -52.4 NC_007605.1 + 25764 0.66 0.989569
Target:  5'- gCCGGGGucccuccgGCugGcCUGGuggaccCGGGGAGGCCa -3'
miRNA:   3'- -GGUCCU--------UGugC-GACUc-----GCUCUUCUGG- -5'
33351 3' -52.4 NC_007605.1 + 136536 0.66 0.989569
Target:  5'- cCCAGGAGguuacUACGCcGGGCccgcgGGcGggGACCc -3'
miRNA:   3'- -GGUCCUU-----GUGCGaCUCG-----CU-CuuCUGG- -5'
33351 3' -52.4 NC_007605.1 + 48814 0.66 0.989569
Target:  5'- gCCAGaGGCugGCUGAGCcaccGAGcGCCc -3'
miRNA:   3'- -GGUCcUUGugCGACUCGcu--CUUcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.