miRNA display CGI


Results 1 - 20 of 157 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33397 5' -54.3 NC_007605.1 + 13540 0.66 0.969485
Target:  5'- uGGGAGgcgGGAaGGAGA-GGCCaGGGGAg -3'
miRNA:   3'- gCUCUU---UCUgCCUCUaCCGG-CUCCUg -5'
33397 5' -54.3 NC_007605.1 + 22747 0.66 0.969485
Target:  5'- uGGGAGgcgGGAaGGAGA-GGCCaGGGGAg -3'
miRNA:   3'- gCUCUU---UCUgCCUCUaCCGG-CUCCUg -5'
33397 5' -54.3 NC_007605.1 + 19678 0.66 0.969485
Target:  5'- uGGGAGgcgGGAaGGAGA-GGCCaGGGGAg -3'
miRNA:   3'- gCUCUU---UCUgCCUCUaCCGG-CUCCUg -5'
33397 5' -54.3 NC_007605.1 + 47750 0.66 0.969485
Target:  5'- --cGGAGG-UGGAGA-GGCCcGGGGGCc -3'
miRNA:   3'- gcuCUUUCuGCCUCUaCCGG-CUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 16609 0.66 0.969485
Target:  5'- uGGGAGgcgGGAaGGAGA-GGCCaGGGGAg -3'
miRNA:   3'- gCUCUU---UCUgCCUCUaCCGG-CUCCUg -5'
33397 5' -54.3 NC_007605.1 + 61077 0.66 0.969485
Target:  5'- uCGAuGAAGGCGGccgggaAGAaggGGCUGuGGACa -3'
miRNA:   3'- -GCUcUUUCUGCC------UCUa--CCGGCuCCUG- -5'
33397 5' -54.3 NC_007605.1 + 144609 0.66 0.969485
Target:  5'- ----cAAGGCGGGGGUugGGCCcAGGGCc -3'
miRNA:   3'- gcucuUUCUGCCUCUA--CCGGcUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 35023 0.66 0.969485
Target:  5'- uGGGAGgcgGGAaGGAGA-GGCCaGGGGAg -3'
miRNA:   3'- gCUCUU---UCUgCCUCUaCCGG-CUCCUg -5'
33397 5' -54.3 NC_007605.1 + 25816 0.66 0.969485
Target:  5'- uGGGAGgcgGGAaGGAGA-GGCCaGGGGAg -3'
miRNA:   3'- gCUCUU---UCUgCCUCUaCCGG-CUCCUg -5'
33397 5' -54.3 NC_007605.1 + 31954 0.66 0.969485
Target:  5'- uGGGAGgcgGGAaGGAGA-GGCCaGGGGAg -3'
miRNA:   3'- gCUCUU---UCUgCCUCUaCCGG-CUCCUg -5'
33397 5' -54.3 NC_007605.1 + 74997 0.66 0.969485
Target:  5'- uGAuGGAGAUGGAGAaggUGGCCacggcgcucaaGAuGGACg -3'
miRNA:   3'- gCUcUUUCUGCCUCU---ACCGG-----------CU-CCUG- -5'
33397 5' -54.3 NC_007605.1 + 28885 0.66 0.969485
Target:  5'- uGGGAGgcgGGAaGGAGA-GGCCaGGGGAg -3'
miRNA:   3'- gCUCUU---UCUgCCUCUaCCGG-CUCCUg -5'
33397 5' -54.3 NC_007605.1 + 120096 0.66 0.966421
Target:  5'- gGAGGAAGAUGGc-GUGGUccaCGAGcGGCg -3'
miRNA:   3'- gCUCUUUCUGCCucUACCG---GCUC-CUG- -5'
33397 5' -54.3 NC_007605.1 + 138135 0.66 0.966421
Target:  5'- uGAGucGGucucuCGGAucGAguugGGCCGGGGAUa -3'
miRNA:   3'- gCUCuuUCu----GCCU--CUa---CCGGCUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 161110 0.66 0.966421
Target:  5'- gGAGGGAG-UGuGGGGUgGGCCcGGGGCa -3'
miRNA:   3'- gCUCUUUCuGC-CUCUA-CCGGcUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 105541 0.66 0.963146
Target:  5'- aGGGGcgcccccGugGGAacgccuGAUGGCgGAGGGCa -3'
miRNA:   3'- gCUCUuu-----CugCCU------CUACCGgCUCCUG- -5'
33397 5' -54.3 NC_007605.1 + 171235 0.66 0.959655
Target:  5'- uCGGGggGGuCGGGGGgcGCCGcgcGGGCg -3'
miRNA:   3'- -GCUCuuUCuGCCUCUacCGGCu--CCUG- -5'
33397 5' -54.3 NC_007605.1 + 57725 0.66 0.959655
Target:  5'- uGAGAcuGGCGcGGGGUGGggugUCGGGGAg -3'
miRNA:   3'- gCUCUuuCUGC-CUCUACC----GGCUCCUg -5'
33397 5' -54.3 NC_007605.1 + 170697 0.66 0.959655
Target:  5'- uCGGGggGGuCGGGGGgcGCCGcgcGGGCg -3'
miRNA:   3'- -GCUCuuUCuGCCUCUacCGGCu--CCUG- -5'
33397 5' -54.3 NC_007605.1 + 170175 0.66 0.959655
Target:  5'- uCGGGggGGuCGGGGGgcGCCGcgcGGGCg -3'
miRNA:   3'- -GCUCuuUCuGCCUCUacCGGCu--CCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.