miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33399 3' -54.6 NC_007605.1 + 16465 0.66 0.95373
Target:  5'- aCCgGGUccaucaGGCCGgCCGGAGGGAc--- -3'
miRNA:   3'- aGGaCCG------CCGGCgGGUUUUCCUuuug -5'
33399 3' -54.6 NC_007605.1 + 31810 0.66 0.95373
Target:  5'- aCCgGGUccaucaGGCCGgCCGGAGGGAc--- -3'
miRNA:   3'- aGGaCCG------CCGGCgGGUUUUCCUuuug -5'
33399 3' -54.6 NC_007605.1 + 104205 0.66 0.95373
Target:  5'- gCCUGGCcaGGUCaCCCA--AGGAuuACu -3'
miRNA:   3'- aGGACCG--CCGGcGGGUuuUCCUuuUG- -5'
33399 3' -54.6 NC_007605.1 + 13396 0.66 0.95373
Target:  5'- aCCgGGUccaucaGGCCGgCCGGAGGGAc--- -3'
miRNA:   3'- aGGaCCG------CCGGCgGGUUUUCCUuuug -5'
33399 3' -54.6 NC_007605.1 + 22603 0.66 0.95373
Target:  5'- aCCgGGUccaucaGGCCGgCCGGAGGGAc--- -3'
miRNA:   3'- aGGaCCG------CCGGCgGGUUUUCCUuuug -5'
33399 3' -54.6 NC_007605.1 + 25672 0.66 0.95373
Target:  5'- aCCgGGUccaucaGGCCGgCCGGAGGGAc--- -3'
miRNA:   3'- aGGaCCG------CCGGCgGGUUUUCCUuuug -5'
33399 3' -54.6 NC_007605.1 + 28741 0.66 0.95373
Target:  5'- aCCgGGUccaucaGGCCGgCCGGAGGGAc--- -3'
miRNA:   3'- aGGaCCG------CCGGCgGGUUUUCCUuuug -5'
33399 3' -54.6 NC_007605.1 + 61344 0.66 0.95373
Target:  5'- aCCUGcucauacuCGGCCG-CgGGAGGGggGACg -3'
miRNA:   3'- aGGACc-------GCCGGCgGgUUUUCCuuUUG- -5'
33399 3' -54.6 NC_007605.1 + 83251 0.66 0.95373
Target:  5'- cUCCUGGUaucccuGGUauggaGCCUggGGGGGcgGCg -3'
miRNA:   3'- -AGGACCG------CCGg----CGGGuuUUCCUuuUG- -5'
33399 3' -54.6 NC_007605.1 + 19534 0.66 0.95373
Target:  5'- aCCgGGUccaucaGGCCGgCCGGAGGGAc--- -3'
miRNA:   3'- aGGaCCG------CCGGCgGGUUUUCCUuuug -5'
33399 3' -54.6 NC_007605.1 + 34879 0.66 0.95373
Target:  5'- aCCgGGUccaucaGGCCGgCCGGAGGGAc--- -3'
miRNA:   3'- aGGaCCG------CCGGCgGGUUUUCCUuuug -5'
33399 3' -54.6 NC_007605.1 + 112388 0.66 0.952926
Target:  5'- cUCUcGGCGgcugccgccgccaGCCGCguaagaccccggaCCAGAAGGggGGCg -3'
miRNA:   3'- -AGGaCCGC-------------CGGCG-------------GGUUUUCCuuUUG- -5'
33399 3' -54.6 NC_007605.1 + 53502 0.66 0.949614
Target:  5'- cUCCUGGaugauGGCC-UCCAGucGGGAGAg -3'
miRNA:   3'- -AGGACCg----CCGGcGGGUUuuCCUUUUg -5'
33399 3' -54.6 NC_007605.1 + 49882 0.66 0.949614
Target:  5'- uUCCggGGCGGCgGUggaUGAGAGGAGGGg -3'
miRNA:   3'- -AGGa-CCGCCGgCGg--GUUUUCCUUUUg -5'
33399 3' -54.6 NC_007605.1 + 112023 0.66 0.949614
Target:  5'- aCCUGG-GGCCGUagAAGAGGGc--- -3'
miRNA:   3'- aGGACCgCCGGCGggUUUUCCUuuug -5'
33399 3' -54.6 NC_007605.1 + 47342 0.66 0.949614
Target:  5'- cUCUGagaugguaGCGGCCGUguCCG--GGGAGAGCg -3'
miRNA:   3'- aGGAC--------CGCCGGCG--GGUuuUCCUUUUG- -5'
33399 3' -54.6 NC_007605.1 + 11642 0.66 0.949189
Target:  5'- cCCggGGCGGCCGgaggCAGAGGGGgcgaccaGAGCg -3'
miRNA:   3'- aGGa-CCGCCGGCgg--GUUUUCCU-------UUUG- -5'
33399 3' -54.6 NC_007605.1 + 42864 0.66 0.94703
Target:  5'- aUCCUGcauuuuuuGUGGCUuuGCCCugcucaguuaugaugAAAAGGAAGGCu -3'
miRNA:   3'- -AGGAC--------CGCCGG--CGGG---------------UUUUCCUUUUG- -5'
33399 3' -54.6 NC_007605.1 + 100860 0.66 0.945261
Target:  5'- gUCCauuaUGGCCGCCCu-GGGGAcGACg -3'
miRNA:   3'- -AGGacc-GCCGGCGGGuuUUCCUuUUG- -5'
33399 3' -54.6 NC_007605.1 + 50799 0.66 0.945261
Target:  5'- gUCCUGG-GGCUggaGCCCAAAAGu----- -3'
miRNA:   3'- -AGGACCgCCGG---CGGGUUUUCcuuuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.