miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33417 3' -55.8 NC_007605.1 + 117483 0.66 0.922923
Target:  5'- gGACUCGGcgcucugGCCUaagaagcccCAGCUGCUGaCAagGCg -3'
miRNA:   3'- gUUGAGCC-------UGGA---------GUCGGCGAC-GUa-CG- -5'
33417 3' -55.8 NC_007605.1 + 117929 0.66 0.912058
Target:  5'- gGGCgCGGguGCCUggcugaaccUAGCCGCUGCG-GCu -3'
miRNA:   3'- gUUGaGCC--UGGA---------GUCGGCGACGUaCG- -5'
33417 3' -55.8 NC_007605.1 + 121384 0.66 0.912058
Target:  5'- cCGGCUCGGAgCCU-GGCgCGCgGCccgagGUGCg -3'
miRNA:   3'- -GUUGAGCCU-GGAgUCG-GCGaCG-----UACG- -5'
33417 3' -55.8 NC_007605.1 + 132697 0.66 0.905996
Target:  5'- gCAGCggcccagCGGACCcaccggCGGCCGCccgGC-UGCc -3'
miRNA:   3'- -GUUGa------GCCUGGa-----GUCGGCGa--CGuACG- -5'
33417 3' -55.8 NC_007605.1 + 122675 0.66 0.905996
Target:  5'- -----aGGACCacCGGCCGCaUGCAagUGCg -3'
miRNA:   3'- guugagCCUGGa-GUCGGCG-ACGU--ACG- -5'
33417 3' -55.8 NC_007605.1 + 133196 0.66 0.905996
Target:  5'- gCAGCggcccagCGGACCcaccggCGGCCGCccgGC-UGCc -3'
miRNA:   3'- -GUUGa------GCCUGGa-----GUCGGCGa--CGuACG- -5'
33417 3' -55.8 NC_007605.1 + 132197 0.66 0.905996
Target:  5'- gCAGCggcccagCGGACCcaccggCGGCCGCccgGC-UGCc -3'
miRNA:   3'- -GUUGa------GCCUGGa-----GUCGGCGa--CGuACG- -5'
33417 3' -55.8 NC_007605.1 + 133321 0.66 0.905996
Target:  5'- gCAGCggcccagCGGACCcaccggCGGCCGCccgGC-UGCc -3'
miRNA:   3'- -GUUGa------GCCUGGa-----GUCGGCGa--CGuACG- -5'
33417 3' -55.8 NC_007605.1 + 133071 0.66 0.905996
Target:  5'- gCAGCggcccagCGGACCcaccggCGGCCGCccgGC-UGCc -3'
miRNA:   3'- -GUUGa------GCCUGGa-----GUCGGCGa--CGuACG- -5'
33417 3' -55.8 NC_007605.1 + 131947 0.66 0.905996
Target:  5'- gCAGCggcccagCGGACCcaccggCGGCCGCccgGC-UGCc -3'
miRNA:   3'- -GUUGa------GCCUGGa-----GUCGGCGa--CGuACG- -5'
33417 3' -55.8 NC_007605.1 + 132322 0.66 0.905996
Target:  5'- gCAGCggcccagCGGACCcaccggCGGCCGCccgGC-UGCc -3'
miRNA:   3'- -GUUGa------GCCUGGa-----GUCGGCGa--CGuACG- -5'
33417 3' -55.8 NC_007605.1 + 132072 0.66 0.905996
Target:  5'- gCAGCggcccagCGGACCcaccggCGGCCGCccgGC-UGCc -3'
miRNA:   3'- -GUUGa------GCCUGGa-----GUCGGCGa--CGuACG- -5'
33417 3' -55.8 NC_007605.1 + 132447 0.66 0.905996
Target:  5'- gCAGCggcccagCGGACCcaccggCGGCCGCccgGC-UGCc -3'
miRNA:   3'- -GUUGa------GCCUGGa-----GUCGGCGa--CGuACG- -5'
33417 3' -55.8 NC_007605.1 + 132821 0.66 0.905996
Target:  5'- gCAGCggcccagCGGACCcaccggCGGCCGCccgGC-UGCc -3'
miRNA:   3'- -GUUGa------GCCUGGa-----GUCGGCGa--CGuACG- -5'
33417 3' -55.8 NC_007605.1 + 132572 0.66 0.905996
Target:  5'- gCAGCggcccagCGGACCcaccggCGGCCGCccgGC-UGCc -3'
miRNA:   3'- -GUUGa------GCCUGGa-----GUCGGCGa--CGuACG- -5'
33417 3' -55.8 NC_007605.1 + 132946 0.66 0.905996
Target:  5'- gCAGCggcccagCGGACCcaccggCGGCCGCccgGC-UGCc -3'
miRNA:   3'- -GUUGa------GCCUGGa-----GUCGGCGa--CGuACG- -5'
33417 3' -55.8 NC_007605.1 + 109194 0.67 0.893171
Target:  5'- aGACcCGGGCCcuggCGGCCGCguaCcgGCg -3'
miRNA:   3'- gUUGaGCCUGGa---GUCGGCGac-GuaCG- -5'
33417 3' -55.8 NC_007605.1 + 124944 0.67 0.885727
Target:  5'- aAGCUauGAaacaaccCCUCAGCCGCUGacUGCc -3'
miRNA:   3'- gUUGAgcCU-------GGAGUCGGCGACguACG- -5'
33417 3' -55.8 NC_007605.1 + 36546 0.67 0.879434
Target:  5'- gGGCaUGGACCUCuAGCauCUGCuAUGCg -3'
miRNA:   3'- gUUGaGCCUGGAG-UCGgcGACG-UACG- -5'
33417 3' -55.8 NC_007605.1 + 63640 0.67 0.879434
Target:  5'- gGGCU-GGGCCUgCAGCCGUgccccGCcgAUGCg -3'
miRNA:   3'- gUUGAgCCUGGA-GUCGGCGa----CG--UACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.