miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33419 5' -62.4 NC_007605.1 + 90155 0.66 0.684489
Target:  5'- aGGGCCgGACaauaggCCCAGCcgggGCGGGUaCUg -3'
miRNA:   3'- cUCCGGgCUG------GGGUUGa---CGCCCGaGG- -5'
33419 5' -62.4 NC_007605.1 + 119355 0.66 0.684489
Target:  5'- -cGGCCCGcGCCCgAGcCUGCaugcuGCUCCu -3'
miRNA:   3'- cuCCGGGC-UGGGgUU-GACGcc---CGAGG- -5'
33419 5' -62.4 NC_007605.1 + 63567 0.66 0.684489
Target:  5'- gGAGGCCUuugugGAUCUgGAC-GCGuGGCUCUc -3'
miRNA:   3'- -CUCCGGG-----CUGGGgUUGaCGC-CCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 118443 0.66 0.684489
Target:  5'- uGGGGCaauggaGCCCCGACccgGCGGGCa-- -3'
miRNA:   3'- -CUCCGggc---UGGGGUUGa--CGCCCGagg -5'
33419 5' -62.4 NC_007605.1 + 160069 0.66 0.684489
Target:  5'- aGGuGCCCGAgCCCCGcCUGgCGGaCUUCa -3'
miRNA:   3'- cUC-CGGGCU-GGGGUuGAC-GCCcGAGG- -5'
33419 5' -62.4 NC_007605.1 + 149142 0.66 0.67484
Target:  5'- -uGGCCCGGCuUCCAcucCUGUGGGUa-- -3'
miRNA:   3'- cuCCGGGCUG-GGGUu--GACGCCCGagg -5'
33419 5' -62.4 NC_007605.1 + 49100 0.66 0.67484
Target:  5'- -uGGCCCaGACCCUGGCcuacaaCGGGCcagCCu -3'
miRNA:   3'- cuCCGGG-CUGGGGUUGac----GCCCGa--GG- -5'
33419 5' -62.4 NC_007605.1 + 121404 0.66 0.67484
Target:  5'- -cGGCCCGAggugcgccuaUCCCAguaccgGCaUGCGGGUcCCc -3'
miRNA:   3'- cuCCGGGCU----------GGGGU------UG-ACGCCCGaGG- -5'
33419 5' -62.4 NC_007605.1 + 40100 0.66 0.665159
Target:  5'- -cGGUCCGcugGCCCCAccCUGgGGGUagCCg -3'
miRNA:   3'- cuCCGGGC---UGGGGUu-GACgCCCGa-GG- -5'
33419 5' -62.4 NC_007605.1 + 8873 0.66 0.665159
Target:  5'- aGGGCCgGGCCCCGGCcGUGuGC-CUg -3'
miRNA:   3'- cUCCGGgCUGGGGUUGaCGCcCGaGG- -5'
33419 5' -62.4 NC_007605.1 + 13000 0.66 0.655455
Target:  5'- cAGGCCagccggaggGACCCCGGCaGCccGGGCggCCc -3'
miRNA:   3'- cUCCGGg--------CUGGGGUUGaCG--CCCGa-GG- -5'
33419 5' -62.4 NC_007605.1 + 150121 0.66 0.655455
Target:  5'- cGAGcGCCgGgACgCUAguGCUGCauGGGCUCCu -3'
miRNA:   3'- -CUC-CGGgC-UGgGGU--UGACG--CCCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 34483 0.66 0.655455
Target:  5'- cAGGCCagccggaggGACCCCGGCaGCccGGGCggCCc -3'
miRNA:   3'- cUCCGGg--------CUGGGGUUGaCG--CCCGa-GG- -5'
33419 5' -62.4 NC_007605.1 + 22207 0.66 0.655455
Target:  5'- cAGGCCagccggaggGACCCCGGCaGCccGGGCggCCc -3'
miRNA:   3'- cUCCGGg--------CUGGGGUUGaCG--CCCGa-GG- -5'
33419 5' -62.4 NC_007605.1 + 159493 0.66 0.655455
Target:  5'- cGGGCCgGgcucucguGCCCCAGCcgGCcggggcaccuccGGGCUCUc -3'
miRNA:   3'- cUCCGGgC--------UGGGGUUGa-CG------------CCCGAGG- -5'
33419 5' -62.4 NC_007605.1 + 4280 0.66 0.655455
Target:  5'- -uGGCCaCGACCCCA----CGGGCaCCc -3'
miRNA:   3'- cuCCGG-GCUGGGGUugacGCCCGaGG- -5'
33419 5' -62.4 NC_007605.1 + 28345 0.66 0.655455
Target:  5'- cAGGCCagccggaggGACCCCGGCaGCccGGGCggCCc -3'
miRNA:   3'- cUCCGGg--------CUGGGGUUGaCG--CCCGa-GG- -5'
33419 5' -62.4 NC_007605.1 + 19138 0.66 0.655455
Target:  5'- cAGGCCagccggaggGACCCCGGCaGCccGGGCggCCc -3'
miRNA:   3'- cUCCGGg--------CUGGGGUUGaCG--CCCGa-GG- -5'
33419 5' -62.4 NC_007605.1 + 31414 0.66 0.655455
Target:  5'- cAGGCCagccggaggGACCCCGGCaGCccGGGCggCCc -3'
miRNA:   3'- cUCCGGg--------CUGGGGUUGaCG--CCCGa-GG- -5'
33419 5' -62.4 NC_007605.1 + 152779 0.66 0.655455
Target:  5'- aGAGGCuuGggggggucuuuGCCCuCAAg-GCGaGGCUCCu -3'
miRNA:   3'- -CUCCGggC-----------UGGG-GUUgaCGC-CCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.