miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33424 5' -54 NC_007605.1 + 129299 0.66 0.97074
Target:  5'- -gGCCAAC-GCGcgCCCAaGGCUUgGGu -3'
miRNA:   3'- cgUGGUUGuUGCuaGGGU-CCGGAgUC- -5'
33424 5' -54 NC_007605.1 + 34415 0.66 0.97074
Target:  5'- -aGCCAcCcuCGGggCCCAGGCCcCAGa -3'
miRNA:   3'- cgUGGUuGuuGCUa-GGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 15422 0.66 0.97074
Target:  5'- gGCAgCCAGgGACcguuUUCCAGGCCUacgCAGa -3'
miRNA:   3'- -CGU-GGUUgUUGcu--AGGGUCCGGA---GUC- -5'
33424 5' -54 NC_007605.1 + 31346 0.66 0.97074
Target:  5'- -aGCCAcCcuCGGggCCCAGGCCcCAGa -3'
miRNA:   3'- cgUGGUuGuuGCUa-GGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 25208 0.66 0.97074
Target:  5'- -aGCCAcCcuCGGggCCCAGGCCcCAGa -3'
miRNA:   3'- cgUGGUuGuuGCUa-GGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 22139 0.66 0.97074
Target:  5'- -aGCCAcCcuCGGggCCCAGGCCcCAGa -3'
miRNA:   3'- cgUGGUuGuuGCUa-GGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 50388 0.66 0.97074
Target:  5'- gGCGCCGGCcgccAGCGccCCCGuGGCCUUu- -3'
miRNA:   3'- -CGUGGUUG----UUGCuaGGGU-CCGGAGuc -5'
33424 5' -54 NC_007605.1 + 157684 0.66 0.97074
Target:  5'- cGCACCcGCuuUGGggcugccucUCCC-GGCCUUAGa -3'
miRNA:   3'- -CGUGGuUGuuGCU---------AGGGuCCGGAGUC- -5'
33424 5' -54 NC_007605.1 + 16001 0.66 0.97074
Target:  5'- -aGCCAcCcuCGGggCCCAGGCCcCAGa -3'
miRNA:   3'- cgUGGUuGuuGCUa-GGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 19070 0.66 0.97074
Target:  5'- -aGCCAcCcuCGGggCCCAGGCCcCAGa -3'
miRNA:   3'- cgUGGUuGuuGCUa-GGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 28277 0.66 0.97074
Target:  5'- -aGCCAcCcuCGGggCCCAGGCCcCAGa -3'
miRNA:   3'- cgUGGUuGuuGCUa-GGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 16795 0.66 0.97074
Target:  5'- cGgGCCAACAccaaGGUCCgCAucaccGGCCUCAu -3'
miRNA:   3'- -CgUGGUUGUug--CUAGG-GU-----CCGGAGUc -5'
33424 5' -54 NC_007605.1 + 12933 0.66 0.97074
Target:  5'- -aGCCAcCcuCGGggCCCAGGCCcCAGa -3'
miRNA:   3'- cgUGGUuGuuGCUa-GGGUCCGGaGUC- -5'
33424 5' -54 NC_007605.1 + 99035 0.66 0.970449
Target:  5'- aGCGaCGAgGAUGAagcaacccccggcUCUCAGGCCUCAc -3'
miRNA:   3'- -CGUgGUUgUUGCU-------------AGGGUCCGGAGUc -5'
33424 5' -54 NC_007605.1 + 46328 0.66 0.967742
Target:  5'- -gGCCAGgGACGGUgCCcGGaCUCAGa -3'
miRNA:   3'- cgUGGUUgUUGCUAgGGuCCgGAGUC- -5'
33424 5' -54 NC_007605.1 + 123528 0.66 0.967742
Target:  5'- gGCAa-AGCAGCGcUCCaCAGGCCUa-- -3'
miRNA:   3'- -CGUggUUGUUGCuAGG-GUCCGGAguc -5'
33424 5' -54 NC_007605.1 + 136476 0.66 0.967742
Target:  5'- cGCGCCuuccuACGGUCCUgGGGCCggagCGGu -3'
miRNA:   3'- -CGUGGuugu-UGCUAGGG-UCCGGa---GUC- -5'
33424 5' -54 NC_007605.1 + 65908 0.66 0.967742
Target:  5'- uCACCAACAAgGAggaggCCCuuAGGCCa--- -3'
miRNA:   3'- cGUGGUUGUUgCUa----GGG--UCCGGaguc -5'
33424 5' -54 NC_007605.1 + 134329 0.66 0.967742
Target:  5'- gGC-CCAcggugGCGGCaGAccCCCAGGCCUCc- -3'
miRNA:   3'- -CGuGGU-----UGUUG-CUa-GGGUCCGGAGuc -5'
33424 5' -54 NC_007605.1 + 40311 0.66 0.967742
Target:  5'- gGC-CCGGCGggggugggggguGCGcUCCCAGGCCg--- -3'
miRNA:   3'- -CGuGGUUGU------------UGCuAGGGUCCGGaguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.