miRNA display CGI


Results 1 - 20 of 426 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33629 5' -67.6 NC_007605.1 + 75004 0.66 0.46856
Target:  5'- uGGCuCUUucacguccucuaCCCCgGCGGCCuCcacuaccuccucgacCCCGGCCUc -3'
miRNA:   3'- -CCG-GAA------------GGGGgCGCCGG-G---------------GGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 28915 0.66 0.465148
Target:  5'- cGGCCacCCCCCGCcggagcggGGCagcgaCCCAGCg- -3'
miRNA:   3'- -CCGGaaGGGGGCG--------CCGgg---GGGUCGgg -5'
33629 5' -67.6 NC_007605.1 + 39812 0.66 0.465148
Target:  5'- gGGCgUggUCCCC-UGGa-CCCCAGCCCc -3'
miRNA:   3'- -CCGgAa-GGGGGcGCCggGGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 15694 0.66 0.465148
Target:  5'- gGGCCcggacggUCgCCCuCaGCCCCCCAGacagacCCCa -3'
miRNA:   3'- -CCGGa------AGgGGGcGcCGGGGGGUC------GGG- -5'
33629 5' -67.6 NC_007605.1 + 60755 0.66 0.465148
Target:  5'- gGGacgaCagCCCCCaGgGGCCCCC--GCCCu -3'
miRNA:   3'- -CCg---GaaGGGGG-CgCCGGGGGguCGGG- -5'
33629 5' -67.6 NC_007605.1 + 12625 0.66 0.465148
Target:  5'- gGGCCcggacggUCgCCCuCaGCCCCCCAGacagacCCCa -3'
miRNA:   3'- -CCGGa------AGgGGGcGcCGGGGGGUC------GGG- -5'
33629 5' -67.6 NC_007605.1 + 34107 0.66 0.465148
Target:  5'- gGGCCcggacggUCgCCCuCaGCCCCCCAGacagacCCCa -3'
miRNA:   3'- -CCGGa------AGgGGGcGcCGGGGGGUC------GGG- -5'
33629 5' -67.6 NC_007605.1 + 18763 0.66 0.465148
Target:  5'- gGGCCcggacggUCgCCCuCaGCCCCCCAGacagacCCCa -3'
miRNA:   3'- -CCGGa------AGgGGGcGcCGGGGGGUC------GGG- -5'
33629 5' -67.6 NC_007605.1 + 89949 0.66 0.465148
Target:  5'- gGGCCUccaacgCUCCCGCGcgcgucuaauGCCagaaguuuCCCCggGGCCCu -3'
miRNA:   3'- -CCGGAa-----GGGGGCGC----------CGG--------GGGG--UCGGG- -5'
33629 5' -67.6 NC_007605.1 + 21832 0.66 0.465148
Target:  5'- gGGCCcggacggUCgCCCuCaGCCCCCCAGacagacCCCa -3'
miRNA:   3'- -CCGGa------AGgGGGcGcCGGGGGGUC------GGG- -5'
33629 5' -67.6 NC_007605.1 + 24901 0.66 0.465148
Target:  5'- gGGCCcggacggUCgCCCuCaGCCCCCCAGacagacCCCa -3'
miRNA:   3'- -CCGGa------AGgGGGcGcCGGGGGGUC------GGG- -5'
33629 5' -67.6 NC_007605.1 + 31038 0.66 0.465148
Target:  5'- gGGCCcggacggUCgCCCuCaGCCCCCCAGacagacCCCa -3'
miRNA:   3'- -CCGGa------AGgGGGcGcCGGGGGGUC------GGG- -5'
33629 5' -67.6 NC_007605.1 + 27969 0.66 0.465148
Target:  5'- gGGCCcggacggUCgCCCuCaGCCCCCCAGacagacCCCa -3'
miRNA:   3'- -CCGGa------AGgGGGcGcCGGGGGGUC------GGG- -5'
33629 5' -67.6 NC_007605.1 + 140591 0.66 0.464297
Target:  5'- aGUCUcCCCCUGUcccuuugGGUCUcaggaCCCAGCCCu -3'
miRNA:   3'- cCGGAaGGGGGCG-------CCGGG-----GGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 81993 0.66 0.462597
Target:  5'- gGGCa----CCCGUGGCCCCgUugagggcuaguaugGGCCCg -3'
miRNA:   3'- -CCGgaaggGGGCGCCGGGGgG--------------UCGGG- -5'
33629 5' -67.6 NC_007605.1 + 14155 0.66 0.456674
Target:  5'- -uCCUcacCCCCCaGCaGUccaucgCCCCCAGCCCc -3'
miRNA:   3'- ccGGAa--GGGGG-CGcCG------GGGGGUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 1881 0.66 0.456674
Target:  5'- cGGCCUagaCCCGgGGCCCCUgAuuGCUg -3'
miRNA:   3'- -CCGGAaggGGGCgCCGGGGGgU--CGGg -5'
33629 5' -67.6 NC_007605.1 + 48544 0.66 0.456674
Target:  5'- uGCCUg---CCGCgGGUCCCCgGGCCUa -3'
miRNA:   3'- cCGGAagggGGCG-CCGGGGGgUCGGG- -5'
33629 5' -67.6 NC_007605.1 + 6040 0.66 0.456674
Target:  5'- aGGCUaUCCaCCCGCaaugccacCCCCCCAauGCCa -3'
miRNA:   3'- -CCGGaAGG-GGGCGcc------GGGGGGU--CGGg -5'
33629 5' -67.6 NC_007605.1 + 11607 0.66 0.456674
Target:  5'- aGGCCgggcggCCCagaggagggCGCGG-UCCCgGGCCCg -3'
miRNA:   3'- -CCGGaa----GGGg--------GCGCCgGGGGgUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.