miRNA display CGI


Results 1 - 20 of 262 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3578 5' -57.2 NC_001650.1 + 26774 0.66 0.910896
Target:  5'- aGCCCCgagagCAGGGgcagcgagaacaccuGCCCCCCGcGugGAGGu -3'
miRNA:   3'- -UGGGG-----GUUUC---------------UGGGGGGC-CugUUUCu -5'
3578 5' -57.2 NC_001650.1 + 90062 0.66 0.90853
Target:  5'- gACCCgCAccGcCUCUCCGGGCAcGAGAg -3'
miRNA:   3'- -UGGGgGUuuCuGGGGGGCCUGU-UUCU- -5'
3578 5' -57.2 NC_001650.1 + 58223 0.66 0.90853
Target:  5'- aACCUggacaCCAugaggcAGACCUCCCugGGGCAGAGGu -3'
miRNA:   3'- -UGGG-----GGUu-----UCUGGGGGG--CCUGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 172383 0.66 0.90853
Target:  5'- aGCCCCCAuuGGCCCUCUGuGGg----- -3'
miRNA:   3'- -UGGGGGUuuCUGGGGGGC-CUguuucu -5'
3578 5' -57.2 NC_001650.1 + 119843 0.66 0.90853
Target:  5'- cGCgCCCAGcccgcAGACCCUgaacagggagaCCGGGCuGAAGAu -3'
miRNA:   3'- -UGgGGGUU-----UCUGGGG-----------GGCCUG-UUUCU- -5'
3578 5' -57.2 NC_001650.1 + 181144 0.66 0.90853
Target:  5'- cCCCCCuuGGACCCCUgccaccccccuUGGACc---- -3'
miRNA:   3'- uGGGGGuuUCUGGGGG-----------GCCUGuuucu -5'
3578 5' -57.2 NC_001650.1 + 14437 0.66 0.90853
Target:  5'- cCCCCCuuGGACCCCUgccaccccccuUGGACc---- -3'
miRNA:   3'- uGGGGGuuUCUGGGGG-----------GCCUGuuucu -5'
3578 5' -57.2 NC_001650.1 + 5676 0.66 0.90853
Target:  5'- aGCCCCCAuuGGCCCUCUGuGGg----- -3'
miRNA:   3'- -UGGGGGUuuCUGGGGGGC-CUguuucu -5'
3578 5' -57.2 NC_001650.1 + 94716 0.66 0.90853
Target:  5'- cGCCUCCGAGcGGCUCUuuGGGCuccuGGGGu -3'
miRNA:   3'- -UGGGGGUUU-CUGGGGggCCUGu---UUCU- -5'
3578 5' -57.2 NC_001650.1 + 53326 0.66 0.90853
Target:  5'- cCCCCCGAucucACCCggCCGGGCAGAu- -3'
miRNA:   3'- uGGGGGUUuc--UGGGg-GGCCUGUUUcu -5'
3578 5' -57.2 NC_001650.1 + 790 0.66 0.907933
Target:  5'- cGCCCCCucAuuugcaugucucuGAUCCCCgGGACcaauGGGAg -3'
miRNA:   3'- -UGGGGGuuU-------------CUGGGGGgCCUGu---UUCU- -5'
3578 5' -57.2 NC_001650.1 + 51197 0.66 0.907933
Target:  5'- cGCCCCCGu---CCCCCCgcagcucgcacacGGGCAGGc- -3'
miRNA:   3'- -UGGGGGUuucuGGGGGG-------------CCUGUUUcu -5'
3578 5' -57.2 NC_001650.1 + 181816 0.66 0.907933
Target:  5'- cACCCCCGuuGGGCCguggCCUGGugagaagACAAAGAu -3'
miRNA:   3'- -UGGGGGUu-UCUGGg---GGGCC-------UGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 15109 0.66 0.907933
Target:  5'- cACCCCCGuuGGGCCguggCCUGGugagaagACAAAGAu -3'
miRNA:   3'- -UGGGGGUu-UCUGGg---GGGCC-------UGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 124624 0.66 0.902457
Target:  5'- cACCuUCCGAccacaAGAgaCCCCGGugAGAGAu -3'
miRNA:   3'- -UGG-GGGUU-----UCUggGGGGCCugUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 26498 0.66 0.902457
Target:  5'- -aCCCCGGGGACacguuCCCC-GugGAGGAg -3'
miRNA:   3'- ugGGGGUUUCUGg----GGGGcCugUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 89379 0.66 0.902457
Target:  5'- -gCCCCGGAG---CCCCGGGCAcAGGa -3'
miRNA:   3'- ugGGGGUUUCuggGGGGCCUGUuUCU- -5'
3578 5' -57.2 NC_001650.1 + 102623 0.66 0.902457
Target:  5'- cCCCCCAGuccagcccAGAgCCUgCaGACGAAGAg -3'
miRNA:   3'- uGGGGGUU--------UCUgGGGgGcCUGUUUCU- -5'
3578 5' -57.2 NC_001650.1 + 52756 0.66 0.902457
Target:  5'- cGCCCCCGcc-GCCgCCCCGacGACuGAGGa -3'
miRNA:   3'- -UGGGGGUuucUGG-GGGGC--CUGuUUCU- -5'
3578 5' -57.2 NC_001650.1 + 84746 0.66 0.902457
Target:  5'- uUCUCCAauuuucucAAGGCCCgCCgGGugAGGGAg -3'
miRNA:   3'- uGGGGGU--------UUCUGGG-GGgCCugUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.