miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3580 3' -57.2 NC_001650.1 + 293 0.66 0.891523
Target:  5'- gAGGGCCccgaggGGGGGUUuCCCGg---- -3'
miRNA:   3'- -UCCCGGuua---CCCCCGAuGGGUgauuc -5'
3580 3' -57.2 NC_001650.1 + 167000 0.66 0.891523
Target:  5'- gAGGGCCccgaggGGGGGUUuCCCGg---- -3'
miRNA:   3'- -UCCCGGuua---CCCCCGAuGGGUgauuc -5'
3580 3' -57.2 NC_001650.1 + 18138 0.66 0.891523
Target:  5'- gGGGGUgGugugGGGGGCaUACUCACc--- -3'
miRNA:   3'- -UCCCGgUua--CCCCCG-AUGGGUGauuc -5'
3580 3' -57.2 NC_001650.1 + 155823 0.66 0.891523
Target:  5'- cGGGGUCAcgGGGGcGCgcGCCaACUAc- -3'
miRNA:   3'- -UCCCGGUuaCCCC-CGa-UGGgUGAUuc -5'
3580 3' -57.2 NC_001650.1 + 170188 0.66 0.884772
Target:  5'- -cGGCCAAUGGGaGCaGCCUGCcAGGc -3'
miRNA:   3'- ucCCGGUUACCCcCGaUGGGUGaUUC- -5'
3580 3' -57.2 NC_001650.1 + 155785 0.66 0.884772
Target:  5'- gGGGGCUggUGcaGGGGCUGgUgGCcGAGc -3'
miRNA:   3'- -UCCCGGuuAC--CCCCGAUgGgUGaUUC- -5'
3580 3' -57.2 NC_001650.1 + 3481 0.66 0.884772
Target:  5'- -cGGCCAAUGGGaGCaGCCUGCcAGGc -3'
miRNA:   3'- ucCCGGUUACCCcCGaUGGGUGaUUC- -5'
3580 3' -57.2 NC_001650.1 + 168479 0.66 0.884772
Target:  5'- uGGaGGCCcuGUGGGaGG-UGCCCAUUAAa -3'
miRNA:   3'- -UC-CCGGu-UACCC-CCgAUGGGUGAUUc -5'
3580 3' -57.2 NC_001650.1 + 1772 0.66 0.884772
Target:  5'- uGGaGGCCcuGUGGGaGG-UGCCCAUUAAa -3'
miRNA:   3'- -UC-CCGGu-UACCC-CCgAUGGGUGAUUc -5'
3580 3' -57.2 NC_001650.1 + 63972 0.66 0.884772
Target:  5'- uGGGCUAuugGGGGGCgaggGCUUGCa--- -3'
miRNA:   3'- uCCCGGUua-CCCCCGa---UGGGUGauuc -5'
3580 3' -57.2 NC_001650.1 + 129226 0.66 0.884085
Target:  5'- gGGGGUCGA-GGGGaaGCUguccgacGCCCACUc-- -3'
miRNA:   3'- -UCCCGGUUaCCCC--CGA-------UGGGUGAuuc -5'
3580 3' -57.2 NC_001650.1 + 17449 0.66 0.877801
Target:  5'- gGGGGUU--UGuGGGGCUGCCUgggaUGAGg -3'
miRNA:   3'- -UCCCGGuuAC-CCCCGAUGGGug--AUUC- -5'
3580 3' -57.2 NC_001650.1 + 109265 0.66 0.877801
Target:  5'- cGGGGUggCGAUagugGGGGGCgcCCCGCUc-- -3'
miRNA:   3'- -UCCCG--GUUA----CCCCCGauGGGUGAuuc -5'
3580 3' -57.2 NC_001650.1 + 145745 0.66 0.877801
Target:  5'- cAGGGCC-AUGGcGGGCaggUCCGCcGGGu -3'
miRNA:   3'- -UCCCGGuUACC-CCCGau-GGGUGaUUC- -5'
3580 3' -57.2 NC_001650.1 + 184156 0.66 0.877801
Target:  5'- gGGGGUU--UGuGGGGCUGCCUgggaUGAGg -3'
miRNA:   3'- -UCCCGGuuAC-CCCCGAUGGGug--AUUC- -5'
3580 3' -57.2 NC_001650.1 + 143199 0.66 0.870616
Target:  5'- gGGGGUCAucaGGGGCUGCUCGg---- -3'
miRNA:   3'- -UCCCGGUuacCCCCGAUGGGUgauuc -5'
3580 3' -57.2 NC_001650.1 + 130859 0.66 0.870616
Target:  5'- cGaGGCCAAgaccgGGGGGCUggacaagagcGCCC-CcGAGa -3'
miRNA:   3'- uC-CCGGUUa----CCCCCGA----------UGGGuGaUUC- -5'
3580 3' -57.2 NC_001650.1 + 82494 0.66 0.870616
Target:  5'- uGGGGCgAGcgGGGGGCU-CCCucCUccGGGa -3'
miRNA:   3'- -UCCCGgUUa-CCCCCGAuGGGu-GA--UUC- -5'
3580 3' -57.2 NC_001650.1 + 106285 0.66 0.869886
Target:  5'- cGGGCUuaaagaacuugguGGUGGuGGGC-ACCCGCg--- -3'
miRNA:   3'- uCCCGG-------------UUACC-CCCGaUGGGUGauuc -5'
3580 3' -57.2 NC_001650.1 + 174072 0.66 0.863221
Target:  5'- uGGcCCAAUGGGGaCUGUCCACUAu- -3'
miRNA:   3'- uCCcGGUUACCCCcGAUGGGUGAUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.