miRNA display CGI


Results 1 - 20 of 228 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3581 3' -56.8 NC_001650.1 + 52616 0.66 0.917214
Target:  5'- --uGGGGGcCACUgGCCCGggggucCUCGgcACCUCg -3'
miRNA:   3'- gauUCCCC-GUGA-CGGGU------GAGU--UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 26552 0.66 0.917214
Target:  5'- -cGGGGGGCgagguguucucGCUGCCCcuGCUCucggGGCUCa -3'
miRNA:   3'- gaUUCCCCG-----------UGACGGG--UGAG----UUGGGg -5'
3581 3' -56.8 NC_001650.1 + 173362 0.66 0.917214
Target:  5'- ---uGGGG-GCUGCCCAUau--CCCCu -3'
miRNA:   3'- gauuCCCCgUGACGGGUGaguuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 6655 0.66 0.917214
Target:  5'- ---uGGGG-GCUGCCCAUau--CCCCu -3'
miRNA:   3'- gauuCCCCgUGACGGGUGaguuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 38533 0.66 0.917214
Target:  5'- -cGAGGGcGUACaGCCCA----GCCCCc -3'
miRNA:   3'- gaUUCCC-CGUGaCGGGUgaguUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 89431 0.66 0.917214
Target:  5'- -aGAGGGGCcagcaguugccGCcGCCCGCccuggcccgccUCAcgaucucgucGCCCCg -3'
miRNA:   3'- gaUUCCCCG-----------UGaCGGGUG-----------AGU----------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 117890 0.66 0.917214
Target:  5'- ---uGGGGCuGCUGCaCCAcCUCGGCgCa -3'
miRNA:   3'- gauuCCCCG-UGACG-GGU-GAGUUGgGg -5'
3581 3' -56.8 NC_001650.1 + 134156 0.66 0.917214
Target:  5'- -aAGGGGGCGa---CCGCgggCGGCCCUc -3'
miRNA:   3'- gaUUCCCCGUgacgGGUGa--GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 23780 0.66 0.916647
Target:  5'- -aGGGGGGCGCUGacaUCAaguccuuuguggcCUCGGCCUUc -3'
miRNA:   3'- gaUUCCCCGUGACg--GGU-------------GAGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 68827 0.66 0.913779
Target:  5'- -cGAGGGGCGggGCgC-CUCGgacgggacgugccgcGCCCCg -3'
miRNA:   3'- gaUUCCCCGUgaCGgGuGAGU---------------UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 83940 0.66 0.911443
Target:  5'- --cAGGGcauGCACgcGUCCACaaaagagaUCAGCCCCu -3'
miRNA:   3'- gauUCCC---CGUGa-CGGGUG--------AGUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 59475 0.66 0.911443
Target:  5'- -cGGGGGGCACcuuccUGCCCAggacgcagUCGuCCCUg -3'
miRNA:   3'- gaUUCCCCGUG-----ACGGGUg-------AGUuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 50951 0.66 0.911443
Target:  5'- ---uGGuGGCGgcGCCCACcgCGGCCCUg -3'
miRNA:   3'- gauuCC-CCGUgaCGGGUGa-GUUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 63098 0.66 0.911443
Target:  5'- uCUGGGGGuCGC-GCCCccggguGCUCcggAGCCCCc -3'
miRNA:   3'- -GAUUCCCcGUGaCGGG------UGAG---UUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 170915 0.66 0.911443
Target:  5'- ---uGGGGacuCUGUCCgugggcgaGCUCcGCCCCg -3'
miRNA:   3'- gauuCCCCgu-GACGGG--------UGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 4208 0.66 0.911443
Target:  5'- ---uGGGGacuCUGUCCgugggcgaGCUCcGCCCCg -3'
miRNA:   3'- gauuCCCCgu-GACGGG--------UGAGuUGGGG- -5'
3581 3' -56.8 NC_001650.1 + 170569 0.66 0.911443
Target:  5'- gUAGGGGGCuaggaaGCCCcCUacuCCCCu -3'
miRNA:   3'- gAUUCCCCGuga---CGGGuGAguuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 3862 0.66 0.911443
Target:  5'- gUAGGGGGCuaggaaGCCCcCUacuCCCCu -3'
miRNA:   3'- gAUUCCCCGuga---CGGGuGAguuGGGG- -5'
3581 3' -56.8 NC_001650.1 + 89116 0.66 0.911443
Target:  5'- -cGGGGGGCAucCUGCUaCAC-CAcccGCCCUu -3'
miRNA:   3'- gaUUCCCCGU--GACGG-GUGaGU---UGGGG- -5'
3581 3' -56.8 NC_001650.1 + 22482 0.66 0.911443
Target:  5'- -gGAGcGcGGCGCcGCCCGgcaUgGGCCCCg -3'
miRNA:   3'- gaUUC-C-CCGUGaCGGGUg--AgUUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.