miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3592 5' -56.7 NC_001650.1 + 50490 0.66 0.918153
Target:  5'- cGUCUcCcCCGCcGCCGCCCGCUCcCg -3'
miRNA:   3'- cCAGAcGuGGUGuUGGUGGGUGGGuG- -5'
3592 5' -56.7 NC_001650.1 + 159128 0.66 0.918153
Target:  5'- gGGcUCUGUACgaGCAgcACCACCaGCaCCACa -3'
miRNA:   3'- -CC-AGACGUGg-UGU--UGGUGGgUG-GGUG- -5'
3592 5' -56.7 NC_001650.1 + 142176 0.66 0.918153
Target:  5'- --aCUGUcCCACGcugacgGCCACCCACgCgGCg -3'
miRNA:   3'- ccaGACGuGGUGU------UGGUGGGUG-GgUG- -5'
3592 5' -56.7 NC_001650.1 + 179992 0.66 0.918153
Target:  5'- aGGUg-GUggaGCCACAGagagaCACCCACCCu- -3'
miRNA:   3'- -CCAgaCG---UGGUGUUg----GUGGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 106039 0.66 0.918153
Target:  5'- aGG-CgaGCACCACggUCACCauagACUCGCg -3'
miRNA:   3'- -CCaGa-CGUGGUGuuGGUGGg---UGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 119824 0.66 0.918153
Target:  5'- gGGUgUGgGgCGCGGCguccgCGCCCAgCCCGCa -3'
miRNA:   3'- -CCAgACgUgGUGUUG-----GUGGGU-GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 13285 0.66 0.918153
Target:  5'- aGGUg-GUggaGCCACAGagagaCACCCACCCu- -3'
miRNA:   3'- -CCAgaCG---UGGUGUUg----GUGGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 4687 0.66 0.91759
Target:  5'- gGGUCUuaAagacccuCUAgGACCACCCugCCAg -3'
miRNA:   3'- -CCAGAcgU-------GGUgUUGGUGGGugGGUg -5'
3592 5' -56.7 NC_001650.1 + 171394 0.66 0.91759
Target:  5'- gGGUCUuaAagacccuCUAgGACCACCCugCCAg -3'
miRNA:   3'- -CCAGAcgU-------GGUgUUGGUGGGugGGUg -5'
3592 5' -56.7 NC_001650.1 + 117018 0.66 0.914743
Target:  5'- uGGcUCUGguCCACAaacggggaccuggccGCCGCCCugCgGa -3'
miRNA:   3'- -CC-AGACguGGUGU---------------UGGUGGGugGgUg -5'
3592 5' -56.7 NC_001650.1 + 75966 0.66 0.912424
Target:  5'- --cCUG-ACCGCAgagaugACCACCuCACCUACc -3'
miRNA:   3'- ccaGACgUGGUGU------UGGUGG-GUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 11753 0.66 0.912424
Target:  5'- --cCU-CACCGCGACCACCgGgaccCCCAUg -3'
miRNA:   3'- ccaGAcGUGGUGUUGGUGGgU----GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 178460 0.66 0.912424
Target:  5'- --cCU-CACCGCGACCACCgGgaccCCCAUg -3'
miRNA:   3'- ccaGAcGUGGUGUUGGUGGgU----GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 165750 0.66 0.912424
Target:  5'- ----aGUGCUGCAGCUGCCCGCUCAa -3'
miRNA:   3'- ccagaCGUGGUGUUGGUGGGUGGGUg -5'
3592 5' -56.7 NC_001650.1 + 118264 0.66 0.912424
Target:  5'- ---gUGCGCCACGGgcuguacucguCCAgCCUGCCCGCc -3'
miRNA:   3'- ccagACGUGGUGUU-----------GGU-GGGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 89294 0.66 0.912424
Target:  5'- cGGUCgucccccGCGacgagccaguCCGCggUCACCCGCCuCAUg -3'
miRNA:   3'- -CCAGa------CGU----------GGUGuuGGUGGGUGG-GUG- -5'
3592 5' -56.7 NC_001650.1 + 100571 0.66 0.906466
Target:  5'- cGUC-GCACCcgcCGGCCGCgucccUCACCCGCc -3'
miRNA:   3'- cCAGaCGUGGu--GUUGGUG-----GGUGGGUG- -5'
3592 5' -56.7 NC_001650.1 + 89116 0.66 0.906466
Target:  5'- cGGgggGCAUCcuGCuacACCACCCGCCCu- -3'
miRNA:   3'- -CCagaCGUGG--UGu--UGGUGGGUGGGug -5'
3592 5' -56.7 NC_001650.1 + 121275 0.66 0.906466
Target:  5'- cGGcCUGCuCCaACAagaGCCACCUgucCCCGCc -3'
miRNA:   3'- -CCaGACGuGG-UGU---UGGUGGGu--GGGUG- -5'
3592 5' -56.7 NC_001650.1 + 172729 0.66 0.906466
Target:  5'- gGGcCUGC-CCACu-CUACCCuaagGCCCAa -3'
miRNA:   3'- -CCaGACGuGGUGuuGGUGGG----UGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.