miRNA display CGI


Results 1 - 20 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3597 5' -64.8 NC_001650.1 + 71382 0.66 0.587558
Target:  5'- cCCugCGCcggcgcgcuccaGGCCGCcuuucccgaGGCCC-CCgAGCGc -3'
miRNA:   3'- -GGugGCG------------UCGGCG---------CCGGGaGGgUCGU- -5'
3597 5' -64.8 NC_001650.1 + 51660 0.66 0.587558
Target:  5'- aCCACCGUgacGGCCacGCucaGGUUCUCCCuGUAg -3'
miRNA:   3'- -GGUGGCG---UCGG--CG---CCGGGAGGGuCGU- -5'
3597 5' -64.8 NC_001650.1 + 158050 0.66 0.587558
Target:  5'- aCGCCGCAG--GCGGCCCcggaaaCCCuGUAa -3'
miRNA:   3'- gGUGGCGUCggCGCCGGGa-----GGGuCGU- -5'
3597 5' -64.8 NC_001650.1 + 68795 0.66 0.587558
Target:  5'- aCCAgUGCguggggcaGGCCGgGGCCCUCgCUcgaggGGCGg -3'
miRNA:   3'- -GGUgGCG--------UCGGCgCCGGGAG-GG-----UCGU- -5'
3597 5' -64.8 NC_001650.1 + 100575 0.66 0.587558
Target:  5'- gCAcCCGcCGGCCGCGuCCCUCaCCcGCc -3'
miRNA:   3'- gGU-GGC-GUCGGCGCcGGGAG-GGuCGu -5'
3597 5' -64.8 NC_001650.1 + 133892 0.66 0.578087
Target:  5'- -aGCCGCAGgUGCGGgCCUcgcucgCCCGGgAg -3'
miRNA:   3'- ggUGGCGUCgGCGCCgGGA------GGGUCgU- -5'
3597 5' -64.8 NC_001650.1 + 124766 0.66 0.578087
Target:  5'- gUCuCCGguGCugugCGCGGCgCUCCCucGGCGc -3'
miRNA:   3'- -GGuGGCguCG----GCGCCGgGAGGG--UCGU- -5'
3597 5' -64.8 NC_001650.1 + 124985 0.66 0.578087
Target:  5'- uCCGCUGCAGa--CGGCCC-CCCGcGCc -3'
miRNA:   3'- -GGUGGCGUCggcGCCGGGaGGGU-CGu -5'
3597 5' -64.8 NC_001650.1 + 68927 0.66 0.56865
Target:  5'- aCCAgCGCucuacGCCGCccCCCUCCCuGGCu -3'
miRNA:   3'- -GGUgGCGu----CGGCGccGGGAGGG-UCGu -5'
3597 5' -64.8 NC_001650.1 + 49395 0.66 0.56865
Target:  5'- cUCGCCcucggcCAGCgCGCGGCCCUCggacaCCAGa- -3'
miRNA:   3'- -GGUGGc-----GUCG-GCGCCGGGAG-----GGUCgu -5'
3597 5' -64.8 NC_001650.1 + 60389 0.66 0.56865
Target:  5'- gCCGcCCGCAGaCCcCGGCCUccucccucuuUCCCGGg- -3'
miRNA:   3'- -GGU-GGCGUC-GGcGCCGGG----------AGGGUCgu -5'
3597 5' -64.8 NC_001650.1 + 60988 0.66 0.56865
Target:  5'- aCUGCCuCAGgacccCCGCGcCCCUgCCCAGCAc -3'
miRNA:   3'- -GGUGGcGUC-----GGCGCcGGGA-GGGUCGU- -5'
3597 5' -64.8 NC_001650.1 + 53912 0.66 0.565827
Target:  5'- gCCG-CGCucugauuggucgagAGCCGgcUGGCCCUCUCGGCc -3'
miRNA:   3'- -GGUgGCG--------------UCGGC--GCCGGGAGGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 22987 0.66 0.563006
Target:  5'- cCCGCaCGCGGCCGCuaucuuggcgugcauGguGCCCU-CCAGCc -3'
miRNA:   3'- -GGUG-GCGUCGGCG---------------C--CGGGAgGGUCGu -5'
3597 5' -64.8 NC_001650.1 + 608 0.66 0.559252
Target:  5'- -gGCCG-GGCUGCcGCCCUCCCccgGGCc -3'
miRNA:   3'- ggUGGCgUCGGCGcCGGGAGGG---UCGu -5'
3597 5' -64.8 NC_001650.1 + 133284 0.66 0.559252
Target:  5'- cUCGCCGcCGGCCGCGGCUUgggagaUCUagaUAGCu -3'
miRNA:   3'- -GGUGGC-GUCGGCGCCGGG------AGG---GUCGu -5'
3597 5' -64.8 NC_001650.1 + 164635 0.66 0.559252
Target:  5'- aCGCCGCcccgGGCCgcGCGGCacccgggCUCCCGGgGg -3'
miRNA:   3'- gGUGGCG----UCGG--CGCCGg------GAGGGUCgU- -5'
3597 5' -64.8 NC_001650.1 + 167315 0.66 0.559252
Target:  5'- -gGCCG-GGCUGCcGCCCUCCCccgGGCc -3'
miRNA:   3'- ggUGGCgUCGGCGcCGGGAGGG---UCGu -5'
3597 5' -64.8 NC_001650.1 + 51026 0.66 0.559252
Target:  5'- gCGCCGgGGCCGCGGUgC-CCgAGa- -3'
miRNA:   3'- gGUGGCgUCGGCGCCGgGaGGgUCgu -5'
3597 5' -64.8 NC_001650.1 + 182485 0.66 0.559252
Target:  5'- cCCACCaacCAGCCgaGCGGCCaacaaCCGGCc -3'
miRNA:   3'- -GGUGGc--GUCGG--CGCCGGgag--GGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.