miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3598 3' -67.2 NC_001650.1 + 173533 0.66 0.523149
Target:  5'- gCCCCuGCca-CCCauuggGCCAGGGGGCu- -3'
miRNA:   3'- -GGGGcCGcagGGGg----UGGUCCCCCGcg -5'
3598 3' -67.2 NC_001650.1 + 6826 0.66 0.523149
Target:  5'- gCCCCuGCca-CCCauuggGCCAGGGGGCu- -3'
miRNA:   3'- -GGGGcCGcagGGGg----UGGUCCCCCGcg -5'
3598 3' -67.2 NC_001650.1 + 42606 0.66 0.523149
Target:  5'- uUCUGGCagagaacUCUgCCACgGGGGGGCuGCa -3'
miRNA:   3'- gGGGCCGc------AGGgGGUGgUCCCCCG-CG- -5'
3598 3' -67.2 NC_001650.1 + 21513 0.66 0.523149
Target:  5'- gCCCUGG-GUUCUCUACCucggcaggcAGGGGGagaugaGCa -3'
miRNA:   3'- -GGGGCCgCAGGGGGUGG---------UCCCCCg-----CG- -5'
3598 3' -67.2 NC_001650.1 + 117364 0.66 0.523149
Target:  5'- cCCCCucuGaCGUgCCCCuccuaaaguACCAcGGGGGCGa -3'
miRNA:   3'- -GGGGc--C-GCAgGGGG---------UGGU-CCCCCGCg -5'
3598 3' -67.2 NC_001650.1 + 124500 0.66 0.523149
Target:  5'- gCCgCGGCcucGUCCCugCCAUUGGGGGGUu- -3'
miRNA:   3'- -GGgGCCG---CAGGG--GGUGGUCCCCCGcg -5'
3598 3' -67.2 NC_001650.1 + 76910 0.66 0.517822
Target:  5'- -gCCGGUcaaGUUCCUgCACCAcgccgacaaggccacGGGGGUGCa -3'
miRNA:   3'- ggGGCCG---CAGGGG-GUGGU---------------CCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 174190 0.66 0.514283
Target:  5'- aUCCCGGCGg--CCCAau-GGGGGCu- -3'
miRNA:   3'- -GGGGCCGCaggGGGUgguCCCCCGcg -5'
3598 3' -67.2 NC_001650.1 + 66135 0.66 0.514283
Target:  5'- gCCagaaaGGCcg-CCCCGCaCAGGGGGCa- -3'
miRNA:   3'- gGGg----CCGcagGGGGUG-GUCCCCCGcg -5'
3598 3' -67.2 NC_001650.1 + 7483 0.66 0.514283
Target:  5'- aUCCCGGCGg--CCCAau-GGGGGCu- -3'
miRNA:   3'- -GGGGCCGCaggGGGUgguCCCCCGcg -5'
3598 3' -67.2 NC_001650.1 + 72738 0.66 0.514283
Target:  5'- uCCaggaUGGgGUCggCCCCguugACCGcGGGGGCGUa -3'
miRNA:   3'- -GGg---GCCgCAG--GGGG----UGGU-CCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 101576 0.66 0.514283
Target:  5'- aCCCCGcacGCGgguaucUUCUCCGCCAGcGGGCaGCc -3'
miRNA:   3'- -GGGGC---CGC------AGGGGGUGGUCcCCCG-CG- -5'
3598 3' -67.2 NC_001650.1 + 79397 0.66 0.514283
Target:  5'- gCCCCGuCG-CgCCC-CCGGGcGGCGCc -3'
miRNA:   3'- -GGGGCcGCaGgGGGuGGUCCcCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 50787 0.66 0.505478
Target:  5'- aCCaCGGUGggggcggCCCUgACCGGGuuGCGCg -3'
miRNA:   3'- gGG-GCCGCa------GGGGgUGGUCCccCGCG- -5'
3598 3' -67.2 NC_001650.1 + 118759 0.66 0.505478
Target:  5'- cCCCCGcCGcCCCCCuCCucGGuGCGCa -3'
miRNA:   3'- -GGGGCcGCaGGGGGuGGucCCcCGCG- -5'
3598 3' -67.2 NC_001650.1 + 24527 0.66 0.505478
Target:  5'- gCCCGGCuG-CCCCUACCcccuGGccGCGCu -3'
miRNA:   3'- gGGGCCG-CaGGGGGUGGu---CCccCGCG- -5'
3598 3' -67.2 NC_001650.1 + 40448 0.66 0.505478
Target:  5'- cCCCCauCGUCCUCCAgCAGa-GGCGCc -3'
miRNA:   3'- -GGGGccGCAGGGGGUgGUCccCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 134160 0.66 0.504601
Target:  5'- gCUCCGcgggcacuGCGgCCgCCUGCCggggucuGGGGGGCGCc -3'
miRNA:   3'- -GGGGC--------CGCaGG-GGGUGG-------UCCCCCGCG- -5'
3598 3' -67.2 NC_001650.1 + 30518 0.66 0.500227
Target:  5'- gCCCUGcGCGUCCUgcuucgcggaggcggCCAugcugcccaaUCAGGGGGagaGCg -3'
miRNA:   3'- -GGGGC-CGCAGGG---------------GGU----------GGUCCCCCg--CG- -5'
3598 3' -67.2 NC_001650.1 + 28093 0.66 0.496739
Target:  5'- aCCCCcgucaccacguaGGgGUCCCuccugaccgaggCCACCAcGGGGGgGa -3'
miRNA:   3'- -GGGG------------CCgCAGGG------------GGUGGU-CCCCCgCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.