miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3599 5' -52.7 NC_001650.1 + 135600 0.66 0.989293
Target:  5'- -cCGCCaguAUAUAAGGGCgGuGGGUGCc -3'
miRNA:   3'- caGCGGgu-UGUAUUUCUGgC-UCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 118548 0.66 0.989293
Target:  5'- -cUGCCgAGCGcau-GACCGGgguGGCGCa -3'
miRNA:   3'- caGCGGgUUGUauuuCUGGCU---CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 131772 0.66 0.989293
Target:  5'- --gGCCCGAgGU--GGACCacuugaAGGCGCu -3'
miRNA:   3'- cagCGGGUUgUAuuUCUGGc-----UCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 129973 0.66 0.989293
Target:  5'- -gCGCCCGugGcgcGGGCCcuGAGGCuGCu -3'
miRNA:   3'- caGCGGGUugUauuUCUGG--CUCCG-CG- -5'
3599 5' -52.7 NC_001650.1 + 129134 0.66 0.989293
Target:  5'- -gCGCCCGGgGccGAGGACaCGGGG-GCg -3'
miRNA:   3'- caGCGGGUUgUa-UUUCUG-GCUCCgCG- -5'
3599 5' -52.7 NC_001650.1 + 58150 0.66 0.987858
Target:  5'- -cCGCCCAGC-UGAGGguGCCGcccccGGcCGCg -3'
miRNA:   3'- caGCGGGUUGuAUUUC--UGGCu----CC-GCG- -5'
3599 5' -52.7 NC_001650.1 + 1758 0.66 0.987858
Target:  5'- cUC-CCCAuuggcCAUGGAGGCCcuguggGAGGUGCc -3'
miRNA:   3'- cAGcGGGUu----GUAUUUCUGG------CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 168465 0.66 0.987858
Target:  5'- cUC-CCCAuuggcCAUGGAGGCCcuguggGAGGUGCc -3'
miRNA:   3'- cAGcGGGUu----GUAUUUCUGG------CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 82999 0.66 0.987858
Target:  5'- aUCGCCagggGGC-UGGAGGCgGAGGUGa -3'
miRNA:   3'- cAGCGGg---UUGuAUUUCUGgCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 146153 0.66 0.987858
Target:  5'- cUCGCCCGGgcc--GGGCUGGGGCa- -3'
miRNA:   3'- cAGCGGGUUguauuUCUGGCUCCGcg -5'
3599 5' -52.7 NC_001650.1 + 141565 0.66 0.98628
Target:  5'- cUCGCgCUAcuuccGCGUAGAGGaagCGAGGgGCg -3'
miRNA:   3'- cAGCG-GGU-----UGUAUUUCUg--GCUCCgCG- -5'
3599 5' -52.7 NC_001650.1 + 165153 0.66 0.98628
Target:  5'- -gCGCCgGACcgGGGaGCCGGGGUGa -3'
miRNA:   3'- caGCGGgUUGuaUUUcUGGCUCCGCg -5'
3599 5' -52.7 NC_001650.1 + 35636 0.66 0.98628
Target:  5'- -gCGaCCCAGCAgcuUGAGGACCGuccCGCu -3'
miRNA:   3'- caGC-GGGUUGU---AUUUCUGGCuccGCG- -5'
3599 5' -52.7 NC_001650.1 + 69047 0.66 0.985606
Target:  5'- -gCGCgCGGCAcgucccguCCGAGGCGCc -3'
miRNA:   3'- caGCGgGUUGUauuucu--GGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 119844 0.66 0.98526
Target:  5'- -gCGCCCAgcccgcagacccugaACAgggagaccgggcUGAAGAugguguccaCCGAGGUGCa -3'
miRNA:   3'- caGCGGGU---------------UGU------------AUUUCU---------GGCUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 39534 0.66 0.984549
Target:  5'- -cCGCCagaUAGCAUGcagaaGAGACCGAaacuucGGUGCu -3'
miRNA:   3'- caGCGG---GUUGUAU-----UUCUGGCU------CCGCG- -5'
3599 5' -52.7 NC_001650.1 + 96461 0.66 0.984549
Target:  5'- gGUCGCcacCCAGgAUGAccagcGACCcgGGGGCGCc -3'
miRNA:   3'- -CAGCG---GGUUgUAUUu----CUGG--CUCCGCG- -5'
3599 5' -52.7 NC_001650.1 + 172683 0.66 0.984549
Target:  5'- -cCGCUCAcccuaucagaugGCcaAUAAAGGCCGGGGuUGCu -3'
miRNA:   3'- caGCGGGU------------UG--UAUUUCUGGCUCC-GCG- -5'
3599 5' -52.7 NC_001650.1 + 5976 0.66 0.984549
Target:  5'- -cCGCUCAcccuaucagaugGCcaAUAAAGGCCGGGGuUGCu -3'
miRNA:   3'- caGCGGGU------------UG--UAUUUCUGGCUCC-GCG- -5'
3599 5' -52.7 NC_001650.1 + 132479 0.66 0.984549
Target:  5'- cUCGCCCccuGAguUAGuuuuugGGGCCcaGGGGCGCu -3'
miRNA:   3'- cAGCGGG---UUguAUU------UCUGG--CUCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.