Results 1 - 20 of 151 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3605 | 3' | -63.1 | NC_001650.1 | + | 126455 | 0.66 | 0.643665 |
Target: 5'- -cGGCCGUccGAGCgCGCGCgUGGGGGa -3' miRNA: 3'- guCCGGUAc-CUCGgGUGCGgGUCCCU- -5' |
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3605 | 3' | -63.1 | NC_001650.1 | + | 21964 | 0.66 | 0.643665 |
Target: 5'- -cGGCUAccUGG-GCuUCACGCCCcucGGGGAc -3' miRNA: 3'- guCCGGU--ACCuCG-GGUGCGGG---UCCCU- -5' |
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3605 | 3' | -63.1 | NC_001650.1 | + | 51319 | 0.66 | 0.633937 |
Target: 5'- gGGGaCgGUGGccucGGCCCA-GCaCCAGGGGc -3' miRNA: 3'- gUCC-GgUACC----UCGGGUgCG-GGUCCCU- -5' |
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3605 | 3' | -63.1 | NC_001650.1 | + | 128620 | 0.66 | 0.633937 |
Target: 5'- uCGGGCagauagGUGGuguccauguGcCCCGCGgCCAGGGAg -3' miRNA: 3'- -GUCCGg-----UACCu--------C-GGGUGCgGGUCCCU- -5' |
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3605 | 3' | -63.1 | NC_001650.1 | + | 26651 | 0.66 | 0.633937 |
Target: 5'- -uGGCC-UGGGuGCCCACGUucuccuCCAcGGGGc -3' miRNA: 3'- guCCGGuACCU-CGGGUGCG------GGU-CCCU- -5' |
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3605 | 3' | -63.1 | NC_001650.1 | + | 54185 | 0.66 | 0.633937 |
Target: 5'- cCAGucGCCgGUGGAgcucccgggccGCCCAgGCUCAGGGu -3' miRNA: 3'- -GUC--CGG-UACCU-----------CGGGUgCGGGUCCCu -5' |
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3605 | 3' | -63.1 | NC_001650.1 | + | 155770 | 0.66 | 0.633937 |
Target: 5'- gCAGGCaCAgcacGGccGCCCccacccgcCGCCCGGGGGa -3' miRNA: 3'- -GUCCG-GUa---CCu-CGGGu-------GCGGGUCCCU- -5' |
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3605 | 3' | -63.1 | NC_001650.1 | + | 68737 | 0.66 | 0.633937 |
Target: 5'- gCAcGUCAUGGuGGCCCGgGucuCCCGGGGGg -3' miRNA: 3'- -GUcCGGUACC-UCGGGUgC---GGGUCCCU- -5' |
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3605 | 3' | -63.1 | NC_001650.1 | + | 108230 | 0.66 | 0.632964 |
Target: 5'- -cGGCCGUGGAcgaggcgGUCaACGCCUucAGGGGu -3' miRNA: 3'- guCCGGUACCU-------CGGgUGCGGG--UCCCU- -5' |
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3605 | 3' | -63.1 | NC_001650.1 | + | 90521 | 0.66 | 0.632964 |
Target: 5'- -uGGCCccAUGGAGCUuguacauCAUgaGCCCGGGGu -3' miRNA: 3'- guCCGG--UACCUCGG-------GUG--CGGGUCCCu -5' |
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3605 | 3' | -63.1 | NC_001650.1 | + | 79623 | 0.66 | 0.632964 |
Target: 5'- aAGGuagauucCCAcGGGGCgC-CGCCCGGGGGc -3' miRNA: 3'- gUCC-------GGUaCCUCGgGuGCGGGUCCCU- -5' |
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3605 | 3' | -63.1 | NC_001650.1 | + | 129449 | 0.66 | 0.6281 |
Target: 5'- gAGGCCAgGGAGUUCGCGgCCAagaagcuggaggagcGGGu -3' miRNA: 3'- gUCCGGUaCCUCGGGUGCgGGU---------------CCCu -5' |
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3605 | 3' | -63.1 | NC_001650.1 | + | 88616 | 0.66 | 0.624209 |
Target: 5'- -cGGCCAggGGGGUCUACuccuGCCCcggcggcgacgGGGGAg -3' miRNA: 3'- guCCGGUa-CCUCGGGUG----CGGG-----------UCCCU- -5' |
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3605 | 3' | -63.1 | NC_001650.1 | + | 130642 | 0.66 | 0.614486 |
Target: 5'- gAGGCCAuagagacccUGGAGgCCAgGagggucaCCGGGGGc -3' miRNA: 3'- gUCCGGU---------ACCUCgGGUgCg------GGUCCCU- -5' |
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3605 | 3' | -63.1 | NC_001650.1 | + | 26460 | 0.66 | 0.614486 |
Target: 5'- cCAGGCCAgcgUGG-GCCCGugcggcuuCGuguaccuguacCCCGGGGAc -3' miRNA: 3'- -GUCCGGU---ACCuCGGGU--------GC-----------GGGUCCCU- -5' |
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3605 | 3' | -63.1 | NC_001650.1 | + | 77045 | 0.66 | 0.614486 |
Target: 5'- uGGGCCucgggGGAGCCCGUGUCCAcGcGGc -3' miRNA: 3'- gUCCGGua---CCUCGGGUGCGGGU-C-CCu -5' |
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3605 | 3' | -63.1 | NC_001650.1 | + | 146685 | 0.66 | 0.614486 |
Target: 5'- uGGGCuCGcGGcGCCCGggcCGCCUAGGGc -3' miRNA: 3'- gUCCG-GUaCCuCGGGU---GCGGGUCCCu -5' |
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3605 | 3' | -63.1 | NC_001650.1 | + | 85085 | 0.66 | 0.614486 |
Target: 5'- -uGGCCAUuGAGgCCAUcaCCCGGGGGc -3' miRNA: 3'- guCCGGUAcCUCgGGUGc-GGGUCCCU- -5' |
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3605 | 3' | -63.1 | NC_001650.1 | + | 157479 | 0.66 | 0.614486 |
Target: 5'- cCAGGCgCAUGG-GCUacaGCCCcgAGGGGg -3' miRNA: 3'- -GUCCG-GUACCuCGGgugCGGG--UCCCU- -5' |
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3605 | 3' | -63.1 | NC_001650.1 | + | 132593 | 0.66 | 0.614486 |
Target: 5'- cCAGGCCGUcaaaGAGCUCG-GCCgAGGGc -3' miRNA: 3'- -GUCCGGUAc---CUCGGGUgCGGgUCCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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