miRNA display CGI


Results 1 - 20 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3606 3' -63.3 NC_001650.1 + 172035 0.66 0.66318
Target:  5'- gGGgcGGCCAcgUGGUGGGgagGC-GGCCa -3'
miRNA:   3'- -CCauCCGGU--ACCGCCCgggCGaCCGG- -5'
3606 3' -63.3 NC_001650.1 + 156217 0.66 0.66318
Target:  5'- cGGgcgagGGGCaCGUGGUggucacgcagggGGGCUCGgUGGUg -3'
miRNA:   3'- -CCa----UCCG-GUACCG------------CCCGGGCgACCGg -5'
3606 3' -63.3 NC_001650.1 + 95394 0.66 0.66318
Target:  5'- --aAGGCCAguuguagGGUGGGUUC-CcGGCCa -3'
miRNA:   3'- ccaUCCGGUa------CCGCCCGGGcGaCCGG- -5'
3606 3' -63.3 NC_001650.1 + 121973 0.66 0.66318
Target:  5'- uGG-AGGCCAUgcugcgggGGCGGGUCagGC-GGCa -3'
miRNA:   3'- -CCaUCCGGUA--------CCGCCCGGg-CGaCCGg -5'
3606 3' -63.3 NC_001650.1 + 5328 0.66 0.66318
Target:  5'- gGGgcGGCCAcgUGGUGGGgagGC-GGCCa -3'
miRNA:   3'- -CCauCCGGU--ACCGCCCgggCGaCCGG- -5'
3606 3' -63.3 NC_001650.1 + 158372 0.66 0.66318
Target:  5'- gGGUcAGcGCgGUGGCGGGuaccucucCCCuCUgGGCCg -3'
miRNA:   3'- -CCA-UC-CGgUACCGCCC--------GGGcGA-CCGG- -5'
3606 3' -63.3 NC_001650.1 + 78866 0.66 0.66318
Target:  5'- --cAGGCCGUGGCGGuCCaggaaCGCcucgGGCa -3'
miRNA:   3'- ccaUCCGGUACCGCCcGG-----GCGa---CCGg -5'
3606 3' -63.3 NC_001650.1 + 90710 0.66 0.659343
Target:  5'- --gGGGCCAuagagggUGGCagcuucgagagcaaGGGUCUGCUgaGGCCc -3'
miRNA:   3'- ccaUCCGGU-------ACCG--------------CCCGGGCGA--CCGG- -5'
3606 3' -63.3 NC_001650.1 + 111482 0.66 0.653582
Target:  5'- gGGcGGGCacugcugcgGGCGaGGCCCcagauuCUGGCCc -3'
miRNA:   3'- -CCaUCCGgua------CCGC-CCGGGc-----GACCGG- -5'
3606 3' -63.3 NC_001650.1 + 68557 0.66 0.653582
Target:  5'- cGGUGcGGUa---GCGGGCgCCGCgggGGUCg -3'
miRNA:   3'- -CCAU-CCGguacCGCCCG-GGCGa--CCGG- -5'
3606 3' -63.3 NC_001650.1 + 58222 0.66 0.653582
Target:  5'- ----cGUCuagauUGGCGGGCagccccuggaCGCUGGCCu -3'
miRNA:   3'- ccaucCGGu----ACCGCCCGg---------GCGACCGG- -5'
3606 3' -63.3 NC_001650.1 + 72052 0.66 0.653582
Target:  5'- aGU-GGCCcUGGagcaGGCCCuggucaaggugGCUGGCCa -3'
miRNA:   3'- cCAuCCGGuACCgc--CCGGG-----------CGACCGG- -5'
3606 3' -63.3 NC_001650.1 + 46358 0.66 0.653582
Target:  5'- ---cGaGCCggGGCGcGGCgCCGCaucGGCCg -3'
miRNA:   3'- ccauC-CGGuaCCGC-CCG-GGCGa--CCGG- -5'
3606 3' -63.3 NC_001650.1 + 109267 0.66 0.643968
Target:  5'- gGGU-GGCgauaGUGGgGGGCgccCCGCucgucgcccUGGCCa -3'
miRNA:   3'- -CCAuCCGg---UACCgCCCG---GGCG---------ACCGG- -5'
3606 3' -63.3 NC_001650.1 + 94735 0.66 0.643968
Target:  5'- aGG-AGGCgGaGGgGGGCgCGCaGGUCa -3'
miRNA:   3'- -CCaUCCGgUaCCgCCCGgGCGaCCGG- -5'
3606 3' -63.3 NC_001650.1 + 131612 0.66 0.643968
Target:  5'- aGUGGGCgCAgcugcugcUGGCcacccGGCCCgaGCUGGCg -3'
miRNA:   3'- cCAUCCG-GU--------ACCGc----CCGGG--CGACCGg -5'
3606 3' -63.3 NC_001650.1 + 127558 0.66 0.643968
Target:  5'- gGGgaagGGGCgA-GGgGGGCgaCCGCccagGGCCa -3'
miRNA:   3'- -CCa---UCCGgUaCCgCCCG--GGCGa---CCGG- -5'
3606 3' -63.3 NC_001650.1 + 119228 0.66 0.643968
Target:  5'- ---cGGCgG-GGUGGGaCCUGgaGGCCa -3'
miRNA:   3'- ccauCCGgUaCCGCCC-GGGCgaCCGG- -5'
3606 3' -63.3 NC_001650.1 + 72735 0.66 0.643968
Target:  5'- uGGUGGGgCAgacgcugcUGGUgaacGGGUUCGC-GGCCu -3'
miRNA:   3'- -CCAUCCgGU--------ACCG----CCCGGGCGaCCGG- -5'
3606 3' -63.3 NC_001650.1 + 171715 0.66 0.638195
Target:  5'- gGGUGGGCUccGGgGGGCCUccgugugucugauagGCggacgggGGUCc -3'
miRNA:   3'- -CCAUCCGGuaCCgCCCGGG---------------CGa------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.