Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3606 | 5' | -59.4 | NC_001650.1 | + | 51029 | 0.66 | 0.80833 |
Target: 5'- -cGcGCGcCGGGGCCGCg-GuGCCCGAg -3' miRNA: 3'- auCuUGUaGCUCCGGCGgaC-CGGGCU- -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 160200 | 0.66 | 0.80833 |
Target: 5'- aGGAGCAaaGAGGCCaCUaggUGGCCCc- -3' miRNA: 3'- aUCUUGUagCUCCGGcGG---ACCGGGcu -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 132042 | 0.66 | 0.80833 |
Target: 5'- gGGuGACGUCGGcGGCCgGCCaccgccccGGCCUGAa -3' miRNA: 3'- aUC-UUGUAGCU-CCGG-CGGa-------CCGGGCU- -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 130002 | 0.66 | 0.799677 |
Target: 5'- gAGGGCGgcgcgggaCGAGGCCGCg-GGCCUc- -3' miRNA: 3'- aUCUUGUa-------GCUCCGGCGgaCCGGGcu -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 25055 | 0.66 | 0.79088 |
Target: 5'- gGGAGCGaCGuGGCCaGCg-GGCCCGc -3' miRNA: 3'- aUCUUGUaGCuCCGG-CGgaCCGGGCu -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 139569 | 0.66 | 0.79088 |
Target: 5'- cGGGAUuuaaAUCaGGGCCGCCUcgcugguaGGCCCu- -3' miRNA: 3'- aUCUUG----UAGcUCCGGCGGA--------CCGGGcu -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 173515 | 0.66 | 0.79088 |
Target: 5'- aAGGGCAUUG-GGCaauaaaGCCcaUGGCCCa- -3' miRNA: 3'- aUCUUGUAGCuCCGg-----CGG--ACCGGGcu -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 131037 | 0.66 | 0.781947 |
Target: 5'- cAGGGCGgccgccuccuccUgGAGGaCCGCCaGGUCCGGg -3' miRNA: 3'- aUCUUGU------------AgCUCC-GGCGGaCCGGGCU- -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 169987 | 0.66 | 0.781947 |
Target: 5'- aAGGAUAgccaauggGAGGCCuCCgGGCCCGGc -3' miRNA: 3'- aUCUUGUag------CUCCGGcGGaCCGGGCU- -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 3280 | 0.66 | 0.781947 |
Target: 5'- aAGGAUAgccaauggGAGGCCuCCgGGCCCGGc -3' miRNA: 3'- aUCUUGUag------CUCCGGcGGaCCGGGCU- -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 173628 | 0.66 | 0.781947 |
Target: 5'- gAGGGCAUUG-GGCaauaaaGCCcuUGGCCCa- -3' miRNA: 3'- aUCUUGUAGCuCCGg-----CGG--ACCGGGcu -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 52777 | 0.66 | 0.781947 |
Target: 5'- aGGGACucgcggCGGcGGCgGCCcucggGGCCCGGg -3' miRNA: 3'- aUCUUGua----GCU-CCGgCGGa----CCGGGCU- -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 6921 | 0.66 | 0.781947 |
Target: 5'- gAGGGCAUUG-GGCaauaaaGCCcuUGGCCCa- -3' miRNA: 3'- aUCUUGUAGCuCCGg-----CGG--ACCGGGcu -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 77867 | 0.66 | 0.772887 |
Target: 5'- cAGAGgGUgGAgaaGGCCGCgCUGGUCCu- -3' miRNA: 3'- aUCUUgUAgCU---CCGGCG-GACCGGGcu -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 46610 | 0.67 | 0.763707 |
Target: 5'- aUGGAGCGgagGGGGCCGCCgcGGCgCa- -3' miRNA: 3'- -AUCUUGUag-CUCCGGCGGa-CCGgGcu -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 46799 | 0.67 | 0.763707 |
Target: 5'- gUGGGACG-CGAGaGCgGUCUGGUCCc- -3' miRNA: 3'- -AUCUUGUaGCUC-CGgCGGACCGGGcu -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 30714 | 0.67 | 0.763707 |
Target: 5'- gAGAGCGagaggCGGGGCCGCgaGGaCgCGGa -3' miRNA: 3'- aUCUUGUa----GCUCCGGCGgaCC-GgGCU- -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 67208 | 0.67 | 0.763707 |
Target: 5'- cAGGGCGUaCGGGuGCCcggacaggaugaGCCUGGCCagCGAg -3' miRNA: 3'- aUCUUGUA-GCUC-CGG------------CGGACCGG--GCU- -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 75056 | 0.67 | 0.763707 |
Target: 5'- cAGAGC----GGGaCCGCCUGGCUCGc -3' miRNA: 3'- aUCUUGuagcUCC-GGCGGACCGGGCu -5' |
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3606 | 5' | -59.4 | NC_001650.1 | + | 110936 | 0.67 | 0.758146 |
Target: 5'- cUGGGGCugcUGAGGCUguugcugcugcggcaGCCUGGCCUGc -3' miRNA: 3'- -AUCUUGua-GCUCCGG---------------CGGACCGGGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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