Results 1 - 20 of 227 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3615 | 5' | -70.2 | NC_001650.1 | + | 36705 | 0.66 | 0.404222 |
Target: 5'- --aGCCCcagCCUGGCCCuGCCCC-CCg -3' miRNA: 3'- gcgCGGGcagGGGCCGGG-CGGGGcGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 129292 | 0.66 | 0.404222 |
Target: 5'- aGCgaGCCCGUCg-CGGCCaCGUCCaGCCu -3' miRNA: 3'- gCG--CGGGCAGggGCCGG-GCGGGgCGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 108397 | 0.66 | 0.403459 |
Target: 5'- aCGCGCCagcuucuugcccaCGUaggcagagaaCUCGGggaCCCGCCCCaGCCa -3' miRNA: 3'- -GCGCGG-------------GCAg---------GGGCC---GGGCGGGG-CGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 58090 | 0.66 | 0.401936 |
Target: 5'- cCGCGCCCuaccaCCCCcagguggacgcgcaGGCCCaGUaCCUGCCc -3' miRNA: 3'- -GCGCGGGca---GGGG--------------CCGGG-CG-GGGCGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 103008 | 0.66 | 0.399658 |
Target: 5'- aGgGCCCGccuguUCCUCaugcugggagggagaGGCCgGCgCCGCCu -3' miRNA: 3'- gCgCGGGC-----AGGGG---------------CCGGgCGgGGCGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 136481 | 0.66 | 0.396634 |
Target: 5'- cCGCaucaGCCCGUcagcuucgCCCCcGCCaagaagguCGCCgCCGCCa -3' miRNA: 3'- -GCG----CGGGCA--------GGGGcCGG--------GCGG-GGCGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 143254 | 0.66 | 0.396634 |
Target: 5'- gGCGCCC-UCCgCgUGGCCCGCgauacaCUCGCa -3' miRNA: 3'- gCGCGGGcAGG-G-GCCGGGCG------GGGCGg -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 91128 | 0.66 | 0.396634 |
Target: 5'- gGCGCUCGgagaCUgGGUCCuCCCgGCCg -3' miRNA: 3'- gCGCGGGCag--GGgCCGGGcGGGgCGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 134308 | 0.66 | 0.396634 |
Target: 5'- gGCcagacuaCCCGUcuucccCCCCGGCgCC-CCCCGCg -3' miRNA: 3'- gCGc------GGGCA------GGGGCCG-GGcGGGGCGg -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 28273 | 0.66 | 0.396634 |
Target: 5'- gCGuCGCCCacGUCCUC--CCCGCCCuCGCa -3' miRNA: 3'- -GC-GCGGG--CAGGGGccGGGCGGG-GCGg -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 54187 | 0.66 | 0.396634 |
Target: 5'- aGuCGCCgGUggagcUCCCGGgCCGCCCagGCUc -3' miRNA: 3'- gC-GCGGgCA-----GGGGCCgGGCGGGg-CGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 47445 | 0.66 | 0.396634 |
Target: 5'- uGcCGCCCGUgUCCaGGCUCucacCCUCGCCc -3' miRNA: 3'- gC-GCGGGCAgGGG-CCGGGc---GGGGCGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 146685 | 0.66 | 0.396634 |
Target: 5'- uGgGCUCGcggCgCCCGGgCCGCCUaggGCCg -3' miRNA: 3'- gCgCGGGCa--G-GGGCCgGGCGGGg--CGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 125369 | 0.66 | 0.389884 |
Target: 5'- cCGCGUCCGUCuguguCCCGGggcggaagacccucaUCGCCCUcuGCCu -3' miRNA: 3'- -GCGCGGGCAG-----GGGCCg--------------GGCGGGG--CGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 78649 | 0.66 | 0.389139 |
Target: 5'- uGCuGCCCGaggcgUUCCUGGaCCGCCaCgGCCu -3' miRNA: 3'- gCG-CGGGC-----AGGGGCCgGGCGG-GgCGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 97818 | 0.66 | 0.389139 |
Target: 5'- uCGUGaCCCucGUCCCCagaaGCaUCGCCCuCGCCc -3' miRNA: 3'- -GCGC-GGG--CAGGGGc---CG-GGCGGG-GCGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 27535 | 0.66 | 0.389139 |
Target: 5'- uGgGCCaCGgg-CUGGCCUGCCUgGCCg -3' miRNA: 3'- gCgCGG-GCaggGGCCGGGCGGGgCGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 88857 | 0.66 | 0.389139 |
Target: 5'- uGC-CCCGUCaCCCuccucuccCCCGUCgCCGCCg -3' miRNA: 3'- gCGcGGGCAG-GGGcc------GGGCGG-GGCGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 147199 | 0.66 | 0.389139 |
Target: 5'- gCGCGCCC-UCUgaUUGGUCCagaGCCCCggGCCa -3' miRNA: 3'- -GCGCGGGcAGG--GGCCGGG---CGGGG--CGG- -5' |
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3615 | 5' | -70.2 | NC_001650.1 | + | 143659 | 0.66 | 0.389139 |
Target: 5'- gCGCgaGCCCGcgucCCCCGGCUCGguCCUCuCCa -3' miRNA: 3'- -GCG--CGGGCa---GGGGCCGGGC--GGGGcGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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