miRNA display CGI


Results 1 - 20 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3660 3' -63.1 NC_001650.1 + 22380 0.66 0.654667
Target:  5'- uCGGGGCGUAGagccuGCAcaGGuaGCCCa -3'
miRNA:   3'- -GCCCCGCGUCgu---CGUugUCggCGGGg -5'
3660 3' -63.1 NC_001650.1 + 15203 0.66 0.654667
Target:  5'- gCGGGGUugaGGCcGCAGCGGgCuCCCCc -3'
miRNA:   3'- -GCCCCGcg-UCGuCGUUGUCgGcGGGG- -5'
3660 3' -63.1 NC_001650.1 + 181910 0.66 0.654667
Target:  5'- gCGGGGUugaGGCcGCAGCGGgCuCCCCc -3'
miRNA:   3'- -GCCCCGcg-UCGuCGUUGUCgGcGGGG- -5'
3660 3' -63.1 NC_001650.1 + 111484 0.66 0.654667
Target:  5'- uGGGGCG-GGCAcuGCuGCGGgCgagGCCCCa -3'
miRNA:   3'- gCCCCGCgUCGU--CGuUGUCgG---CGGGG- -5'
3660 3' -63.1 NC_001650.1 + 136781 0.66 0.654667
Target:  5'- uGGGGCuGguGCGGCGAUGGa---CCCg -3'
miRNA:   3'- gCCCCG-CguCGUCGUUGUCggcgGGG- -5'
3660 3' -63.1 NC_001650.1 + 163530 0.66 0.654667
Target:  5'- aGGGGCGgccCGGCAcCAGaCC-CCCCg -3'
miRNA:   3'- gCCCCGCgucGUCGUuGUC-GGcGGGG- -5'
3660 3' -63.1 NC_001650.1 + 60191 0.66 0.654667
Target:  5'- uCGGGGCcCAGaCcGCccuGCGGCUGaCCCUg -3'
miRNA:   3'- -GCCCCGcGUC-GuCGu--UGUCGGC-GGGG- -5'
3660 3' -63.1 NC_001650.1 + 110799 0.66 0.654667
Target:  5'- -cGGGCGaucgcCAGCAGCcucagAGCcaGGCUGCCCa -3'
miRNA:   3'- gcCCCGC-----GUCGUCG-----UUG--UCGGCGGGg -5'
3660 3' -63.1 NC_001650.1 + 169846 0.66 0.654667
Target:  5'- aGGGGaGgGGCuGCuccauuaaugGACAGCC-CCCCu -3'
miRNA:   3'- gCCCCgCgUCGuCG----------UUGUCGGcGGGG- -5'
3660 3' -63.1 NC_001650.1 + 3139 0.66 0.654667
Target:  5'- aGGGGaGgGGCuGCuccauuaaugGACAGCC-CCCCu -3'
miRNA:   3'- gCCCCgCgUCGuCG----------UUGUCGGcGGGG- -5'
3660 3' -63.1 NC_001650.1 + 31252 0.66 0.651765
Target:  5'- uGGGGCGaaGGgGGCGGaGGCCauugccgacgcggaGCCCCu -3'
miRNA:   3'- gCCCCGCg-UCgUCGUUgUCGG--------------CGGGG- -5'
3660 3' -63.1 NC_001650.1 + 27494 0.66 0.64499
Target:  5'- cCGGGGCgGCGGCGGggagaacguguaCAACAGCUucuuuauggGCCa- -3'
miRNA:   3'- -GCCCCG-CGUCGUC------------GUUGUCGG---------CGGgg -5'
3660 3' -63.1 NC_001650.1 + 39364 0.66 0.64499
Target:  5'- gGGGGUcaGGuCAGCcaaaacacAACAGCC-CCCCa -3'
miRNA:   3'- gCCCCGcgUC-GUCG--------UUGUCGGcGGGG- -5'
3660 3' -63.1 NC_001650.1 + 122270 0.66 0.64499
Target:  5'- gGGGGCGCcu--GaUGugGGCCaGCCCCg -3'
miRNA:   3'- gCCCCGCGucguC-GUugUCGG-CGGGG- -5'
3660 3' -63.1 NC_001650.1 + 84788 0.66 0.64499
Target:  5'- aGGGcccaCGCGGUGGCca-AGCUGCCCg -3'
miRNA:   3'- gCCCc---GCGUCGUCGuugUCGGCGGGg -5'
3660 3' -63.1 NC_001650.1 + 133682 0.66 0.64499
Target:  5'- -cGGGCGagcgaGGCccGCAccuGCGGCUGCCUCu -3'
miRNA:   3'- gcCCCGCg----UCGu-CGU---UGUCGGCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 107678 0.66 0.64499
Target:  5'- uGGGGCGCGG-AG-AAguGCCuGCCUg -3'
miRNA:   3'- gCCCCGCGUCgUCgUUguCGG-CGGGg -5'
3660 3' -63.1 NC_001650.1 + 134368 0.66 0.64499
Target:  5'- uGGGGag-GGCcGCccGCGGUCGCCCCc -3'
miRNA:   3'- gCCCCgcgUCGuCGu-UGUCGGCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 22820 0.66 0.644021
Target:  5'- gGGGGCGCugaaagaAGUcgcccaacauaaAGaccgaGGCGccGCCGCCCCg -3'
miRNA:   3'- gCCCCGCG-------UCG------------UCg----UUGU--CGGCGGGG- -5'
3660 3' -63.1 NC_001650.1 + 37225 0.66 0.639178
Target:  5'- aGGGGCuggcagacauauuggGCAgGCGGguGgAGUgCGCCCCc -3'
miRNA:   3'- gCCCCG---------------CGU-CGUCguUgUCG-GCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.