Results 1 - 20 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3671 | 3' | -71.2 | NC_001650.1 | + | 108857 | 0.66 | 0.385796 |
Target: 5'- aGGuCGGGGGACaggcgcgaggCCGGGuGGuCGGCcaGGa -3' miRNA: 3'- gCC-GCCCCCUG----------GGCCC-CC-GCCGccCC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 75400 | 0.66 | 0.385796 |
Target: 5'- uGGCgcuGGGGGcgagACCCgaucuagcucagGGGGGCgGGCGaGGa -3' miRNA: 3'- gCCG---CCCCC----UGGG------------CCCCCG-CCGC-CCc -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 24061 | 0.66 | 0.385796 |
Target: 5'- gGGaCGGGGG-CCUGuGGGCGGCccuGGc -3' miRNA: 3'- gCC-GCCCCCuGGGCcCCCGCCGc--CCc -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 159609 | 0.66 | 0.378515 |
Target: 5'- gCGGCGGGGG---CGGuGGGCaa-GGGGg -3' miRNA: 3'- -GCCGCCCCCuggGCC-CCCGccgCCCC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 118961 | 0.66 | 0.378515 |
Target: 5'- aGGaGGGGGGCggcgaGGGGGCGGUGu-- -3' miRNA: 3'- gCCgCCCCCUGgg---CCCCCGCCGCccc -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 77169 | 0.66 | 0.378515 |
Target: 5'- aGGCcucGGGcacGGGCauGGGGGCGGUGGu- -3' miRNA: 3'- gCCG---CCC---CCUGggCCCCCGCCGCCcc -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 127011 | 0.66 | 0.371326 |
Target: 5'- gGGUcGGGaGCCCGGGGGgcaGuGCGaGGGc -3' miRNA: 3'- gCCGcCCCcUGGGCCCCCg--C-CGC-CCC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 131352 | 0.66 | 0.371326 |
Target: 5'- cCGGCcGGGGGCCCuguacGGGacucuGGCcaagaGGCuGGGGg -3' miRNA: 3'- -GCCGcCCCCUGGG-----CCC-----CCG-----CCG-CCCC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 150942 | 0.66 | 0.368477 |
Target: 5'- aGGCGGaggcuuGGGuuuagguucagguUCgGGGGGUGGCGGuGGc -3' miRNA: 3'- gCCGCC------CCCu------------GGgCCCCCGCCGCC-CC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 133147 | 0.66 | 0.364231 |
Target: 5'- gGGCucgcgccgcgGGGGGACCCucGGGCGGCu--- -3' miRNA: 3'- gCCG----------CCCCCUGGGccCCCGCCGcccc -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 29374 | 0.66 | 0.364231 |
Target: 5'- aGGCGcaGcGuCCaGGGGGCGGCGGuGGc -3' miRNA: 3'- gCCGCccC-CuGGgCCCCCGCCGCC-CC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 37567 | 0.66 | 0.357231 |
Target: 5'- uGGUgauGGGGGACgaggCGGugcGGGCGGCGGc- -3' miRNA: 3'- gCCG---CCCCCUGg---GCC---CCCGCCGCCcc -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 38134 | 0.66 | 0.357231 |
Target: 5'- aCGGCcgGGGGGAUguugugCUGGGccgcGuaGGCGGGGu -3' miRNA: 3'- -GCCG--CCCCCUG------GGCCC----CcgCCGCCCC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 129980 | 0.66 | 0.356536 |
Target: 5'- uGGCGcGGG-CCCugaGGcugcugaGGGCGGCGcGGGa -3' miRNA: 3'- gCCGCcCCCuGGG---CC-------CCCGCCGC-CCC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 18093 | 0.66 | 0.353076 |
Target: 5'- gGGCucuaaccucugauauGGGGGAagaaugccuCCCucggcgguGGGGGUGGUGuGGGg -3' miRNA: 3'- gCCG---------------CCCCCU---------GGG--------CCCCCGCCGC-CCC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 123947 | 0.66 | 0.350325 |
Target: 5'- --aCGuGGGGcCCaCGGGGGUGGaguacaCGGGGg -3' miRNA: 3'- gccGC-CCCCuGG-GCCCCCGCC------GCCCC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 155631 | 0.66 | 0.350325 |
Target: 5'- gGGCGGGGag---GGGGGaggagaGGUGGGGa -3' miRNA: 3'- gCCGCCCCcugggCCCCCg-----CCGCCCC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 143867 | 0.66 | 0.343515 |
Target: 5'- cCGaGcCGGGGGACgCGGGcucGCGcgucuuGCGGGGc -3' miRNA: 3'- -GC-C-GCCCCCUGgGCCCc--CGC------CGCCCC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 131532 | 0.66 | 0.343515 |
Target: 5'- -cGCGGucaacguGGccGCCCGGGGGCuggacGCGGGGc -3' miRNA: 3'- gcCGCCc------CC--UGGGCCCCCGc----CGCCCC- -5' |
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3671 | 3' | -71.2 | NC_001650.1 | + | 155855 | 0.66 | 0.343515 |
Target: 5'- gGGCuGGGGGCguUCGcGGGGCucguggugaGCGGGGu -3' miRNA: 3'- gCCGcCCCCUG--GGC-CCCCGc--------CGCCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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