Results 1 - 20 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3684 | 3' | -55.8 | NC_001650.1 | + | 110478 | 0.65 | 0.943917 |
Target: 5'- uGGAGGUGGagccggccaggcaAGAGGCCG-GAcccCCCGa -3' miRNA: 3'- gUCUCUACCg------------UUUCCGGCgCUu--GGGC- -5' |
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3684 | 3' | -55.8 | NC_001650.1 | + | 28443 | 0.66 | 0.941202 |
Target: 5'- gCGGcGGGUGGgGgcGGCCGUGcugugccuGCCCGg -3' miRNA: 3'- -GUC-UCUACCgUuuCCGGCGCu-------UGGGC- -5' |
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3684 | 3' | -55.8 | NC_001650.1 | + | 169559 | 0.66 | 0.941202 |
Target: 5'- gAGGGggGGagAGAGGCCGgccGCCCGg -3' miRNA: 3'- gUCUCuaCCg-UUUCCGGCgcuUGGGC- -5' |
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3684 | 3' | -55.8 | NC_001650.1 | + | 2852 | 0.66 | 0.941202 |
Target: 5'- gAGGGggGGagAGAGGCCGgccGCCCGg -3' miRNA: 3'- gUCUCuaCCg-UUUCCGGCgcuUGGGC- -5' |
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3684 | 3' | -55.8 | NC_001650.1 | + | 165347 | 0.66 | 0.941202 |
Target: 5'- ---cGcgGGUugaaaGAAGGCgGCGAGCCCc -3' miRNA: 3'- gucuCuaCCG-----UUUCCGgCGCUUGGGc -5' |
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3684 | 3' | -55.8 | NC_001650.1 | + | 29691 | 0.66 | 0.941202 |
Target: 5'- -uGAGAaGGUGGAGGaCGCGGaguGCCUGg -3' miRNA: 3'- guCUCUaCCGUUUCCgGCGCU---UGGGC- -5' |
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3684 | 3' | -55.8 | NC_001650.1 | + | 82341 | 0.66 | 0.93649 |
Target: 5'- --uGGAUGGCGAA-GCCGCccGCCUGc -3' miRNA: 3'- gucUCUACCGUUUcCGGCGcuUGGGC- -5' |
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3684 | 3' | -55.8 | NC_001650.1 | + | 115865 | 0.66 | 0.93649 |
Target: 5'- uGGGcGGUGGCuGAGuGCCGUacaccGGGCCCa -3' miRNA: 3'- gUCU-CUACCGuUUC-CGGCG-----CUUGGGc -5' |
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3684 | 3' | -55.8 | NC_001650.1 | + | 119144 | 0.66 | 0.93649 |
Target: 5'- aAGGGGUGaaaGCAGGuGGCCGUcauGGCCCGc -3' miRNA: 3'- gUCUCUAC---CGUUU-CCGGCGc--UUGGGC- -5' |
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3684 | 3' | -55.8 | NC_001650.1 | + | 70368 | 0.66 | 0.93649 |
Target: 5'- -cGAGAUGGagcuGGCUGUgcuGGACCUGg -3' miRNA: 3'- guCUCUACCguuuCCGGCG---CUUGGGC- -5' |
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3684 | 3' | -55.8 | NC_001650.1 | + | 88401 | 0.66 | 0.933552 |
Target: 5'- aGGAGggGGUGGuGGCgGCGGggagggggaguacucACCCGa -3' miRNA: 3'- gUCUCuaCCGUUuCCGgCGCU---------------UGGGC- -5' |
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3684 | 3' | -55.8 | NC_001650.1 | + | 142877 | 0.66 | 0.931546 |
Target: 5'- aCAGGGAaaUGGCcGccGCCGCcccGGCCCGu -3' miRNA: 3'- -GUCUCU--ACCGuUucCGGCGc--UUGGGC- -5' |
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3684 | 3' | -55.8 | NC_001650.1 | + | 164740 | 0.66 | 0.931546 |
Target: 5'- -cGAGGaGGgGGAGGUCGCGcGCUCa -3' miRNA: 3'- guCUCUaCCgUUUCCGGCGCuUGGGc -5' |
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3684 | 3' | -55.8 | NC_001650.1 | + | 10699 | 0.66 | 0.928466 |
Target: 5'- --uGGGUGGCAGGGGCCuuGGguaacuaucccagugGCCCa -3' miRNA: 3'- gucUCUACCGUUUCCGGcgCU---------------UGGGc -5' |
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3684 | 3' | -55.8 | NC_001650.1 | + | 177406 | 0.66 | 0.928466 |
Target: 5'- --uGGGUGGCAGGGGCCuuGGguaacuaucccagugGCCCa -3' miRNA: 3'- gucUCUACCGUUUCCGGcgCU---------------UGGGc -5' |
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3684 | 3' | -55.8 | NC_001650.1 | + | 101163 | 0.66 | 0.926366 |
Target: 5'- aAGAGG-GGauugGAGGGCC-CGAACCUGu -3' miRNA: 3'- gUCUCUaCCg---UUUCCGGcGCUUGGGC- -5' |
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3684 | 3' | -55.8 | NC_001650.1 | + | 129048 | 0.66 | 0.926366 |
Target: 5'- cCAuGGA-GGCGGuGGCCGCGcgcGACCCc -3' miRNA: 3'- -GUcUCUaCCGUUuCCGGCGC---UUGGGc -5' |
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3684 | 3' | -55.8 | NC_001650.1 | + | 50162 | 0.66 | 0.926366 |
Target: 5'- aGGAGGUcccugaagcugGGCcGGGGCuCGCGu-CCCGg -3' miRNA: 3'- gUCUCUA-----------CCGuUUCCG-GCGCuuGGGC- -5' |
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3684 | 3' | -55.8 | NC_001650.1 | + | 34452 | 0.66 | 0.923146 |
Target: 5'- -cGGGGUGGaGAGGGCggcccaggagccgggCGCGcACCCGg -3' miRNA: 3'- guCUCUACCgUUUCCG---------------GCGCuUGGGC- -5' |
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3684 | 3' | -55.8 | NC_001650.1 | + | 29152 | 0.66 | 0.920952 |
Target: 5'- cCAGGGAcGGCAGgcaccuGGGCCugcucuGCGAcCCCu -3' miRNA: 3'- -GUCUCUaCCGUU------UCCGG------CGCUuGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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