miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3724 3' -54.8 NC_001650.1 + 152162 0.66 0.971954
Target:  5'- uCCUGGugauuuGGGUGGCCAUcuuacUugGgGUGGUc -3'
miRNA:   3'- -GGACC------UCUACCGGUGc----AugUgCACCG- -5'
3724 3' -54.8 NC_001650.1 + 124301 0.66 0.971954
Target:  5'- --gGGAcGA-GGCCGCGgcggACGagGUGGCg -3'
miRNA:   3'- ggaCCU-CUaCCGGUGCa---UGUg-CACCG- -5'
3724 3' -54.8 NC_001650.1 + 119700 0.66 0.971954
Target:  5'- cCCUGGuaguguaaaAGAcauugugGGUCGCGUGCugG-GGUc -3'
miRNA:   3'- -GGACC---------UCUa------CCGGUGCAUGugCaCCG- -5'
3724 3' -54.8 NC_001650.1 + 111151 0.66 0.971954
Target:  5'- uCCUGuucuUGGCCugGUugACGaaGGCc -3'
miRNA:   3'- -GGACcucuACCGGugCAugUGCa-CCG- -5'
3724 3' -54.8 NC_001650.1 + 71735 0.66 0.971679
Target:  5'- --gGGGGAUcaguuugagacGGCgGCGUGCcucucccACGUGGUg -3'
miRNA:   3'- ggaCCUCUA-----------CCGgUGCAUG-------UGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 137075 0.66 0.970271
Target:  5'- --gGGuGAUGGCCAgccCGUuguuggagaugaugaACACG-GGCg -3'
miRNA:   3'- ggaCCuCUACCGGU---GCA---------------UGUGCaCCG- -5'
3724 3' -54.8 NC_001650.1 + 112230 0.66 0.96911
Target:  5'- cCUUGGAGAcGGCCGCcccgcccagGUGC---UGGCa -3'
miRNA:   3'- -GGACCUCUaCCGGUG---------CAUGugcACCG- -5'
3724 3' -54.8 NC_001650.1 + 46915 0.66 0.96911
Target:  5'- gCUGGGGGgggGGuUCGCGauCGCgGUGGCa -3'
miRNA:   3'- gGACCUCUa--CC-GGUGCauGUG-CACCG- -5'
3724 3' -54.8 NC_001650.1 + 54754 0.66 0.96911
Target:  5'- aCCUGGAuuuUGGaCCugGcuuuuggACcCGUGGCu -3'
miRNA:   3'- -GGACCUcu-ACC-GGugCa------UGuGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 54707 0.66 0.96911
Target:  5'- aCCUGGAuuuUGGaCCugGcuuuuggACcCGUGGCu -3'
miRNA:   3'- -GGACCUcu-ACC-GGugCa------UGuGCACCG- -5'
3724 3' -54.8 NC_001650.1 + 66486 0.66 0.96911
Target:  5'- aCCUGGAGuucuGCuuugaCACGcUGCGCGcGGCg -3'
miRNA:   3'- -GGACCUCuac-CG-----GUGC-AUGUGCaCCG- -5'
3724 3' -54.8 NC_001650.1 + 27966 0.66 0.96911
Target:  5'- gCUGGuGAccgcgGGCCACG---ACGUGaGCg -3'
miRNA:   3'- gGACCuCUa----CCGGUGCaugUGCAC-CG- -5'
3724 3' -54.8 NC_001650.1 + 112566 0.66 0.96911
Target:  5'- cCCUGuGGGUGGCCcUGUaggccACACcccUGGCg -3'
miRNA:   3'- -GGACcUCUACCGGuGCA-----UGUGc--ACCG- -5'
3724 3' -54.8 NC_001650.1 + 151482 0.66 0.96911
Target:  5'- uUCUGGGGGUGGC---GUACACcucUGGUu -3'
miRNA:   3'- -GGACCUCUACCGgugCAUGUGc--ACCG- -5'
3724 3' -54.8 NC_001650.1 + 28993 0.66 0.966066
Target:  5'- aCCUGGGGGUcaGGuaCCGCGcGgACG-GGCu -3'
miRNA:   3'- -GGACCUCUA--CC--GGUGCaUgUGCaCCG- -5'
3724 3' -54.8 NC_001650.1 + 21534 0.66 0.966066
Target:  5'- gCUGG-GAgGGCCGCGgcUGCgGUGGa -3'
miRNA:   3'- gGACCuCUaCCGGUGCauGUG-CACCg -5'
3724 3' -54.8 NC_001650.1 + 78664 0.66 0.966066
Target:  5'- uCCUGGAccgccacGGCCugGcggaggACGCG-GGCg -3'
miRNA:   3'- -GGACCUcua----CCGGugCa-----UGUGCaCCG- -5'
3724 3' -54.8 NC_001650.1 + 1468 0.66 0.966066
Target:  5'- -gUGGgcggguaagcGGGUGGCCAgGUaaguagguagGCAgGUGGCc -3'
miRNA:   3'- ggACC----------UCUACCGGUgCA----------UGUgCACCG- -5'
3724 3' -54.8 NC_001650.1 + 168175 0.66 0.966066
Target:  5'- -gUGGgcggguaagcGGGUGGCCAgGUaaguagguagGCAgGUGGCc -3'
miRNA:   3'- ggACC----------UCUACCGGUgCA----------UGUgCACCG- -5'
3724 3' -54.8 NC_001650.1 + 135145 0.66 0.964141
Target:  5'- uUCUGGAGGaugaagguggUgucaaaaagcuugcaGGCCACGUggaGCugGuUGGCg -3'
miRNA:   3'- -GGACCUCU----------A---------------CCGGUGCA---UGugC-ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.