miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3726 5' -58.3 NC_001650.1 + 96012 0.66 0.86527
Target:  5'- -gAGGCCUCg-CCGGCCGAGGcGGGc- -3'
miRNA:   3'- ggUUUGGGGgaGGCCGGUUUC-CCCuu -5'
3726 5' -58.3 NC_001650.1 + 126539 0.66 0.86527
Target:  5'- -aGGGCCCCCUCUuuCC--GGGGGAGa -3'
miRNA:   3'- ggUUUGGGGGAGGccGGuuUCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 77821 0.66 0.86527
Target:  5'- gCCugcuGGCCUCC-CUGGgCGAGGGGGc- -3'
miRNA:   3'- -GGu---UUGGGGGaGGCCgGUUUCCCCuu -5'
3726 5' -58.3 NC_001650.1 + 52451 0.66 0.86527
Target:  5'- uUCAAGuggUCCaCCUCgGGCCugcuccGGGGGAAg -3'
miRNA:   3'- -GGUUU---GGG-GGAGgCCGGuu----UCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 97905 0.66 0.864534
Target:  5'- gCCAAACCCCCcuccuccucgucaUCCGaGUCAGagaucuccAGGcGGAc -3'
miRNA:   3'- -GGUUUGGGGG-------------AGGC-CGGUU--------UCC-CCUu -5'
3726 5' -58.3 NC_001650.1 + 47900 0.66 0.857827
Target:  5'- gCCAcuACCUCCUCaCGuGCCAcaggucGGGGGGc -3'
miRNA:   3'- -GGUu-UGGGGGAG-GC-CGGUu-----UCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 11461 0.66 0.857827
Target:  5'- cCCGGGCCCaaUggGGaCCGAGGGGGAc -3'
miRNA:   3'- -GGUUUGGGggAggCC-GGUUUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 157394 0.66 0.857827
Target:  5'- gCAGguGCCCCaggUCGGCCAacucgAAGGGGc- -3'
miRNA:   3'- gGUU--UGGGGga-GGCCGGU-----UUCCCCuu -5'
3726 5' -58.3 NC_001650.1 + 178168 0.66 0.857827
Target:  5'- cCCGGGCCCaaUggGGaCCGAGGGGGAc -3'
miRNA:   3'- -GGUUUGGGggAggCC-GGUUUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 173289 0.66 0.857827
Target:  5'- cCUAAGCCCCCaUUgGGCCAu-GGGc-- -3'
miRNA:   3'- -GGUUUGGGGG-AGgCCGGUuuCCCcuu -5'
3726 5' -58.3 NC_001650.1 + 6582 0.66 0.857827
Target:  5'- cCUAAGCCCCCaUUgGGCCAu-GGGc-- -3'
miRNA:   3'- -GGUUUGGGGG-AGgCCGGUuuCCCcuu -5'
3726 5' -58.3 NC_001650.1 + 35668 0.66 0.854795
Target:  5'- gUCGAGCCagggguucguggaCCUCCuGGCCGGGGGGc-- -3'
miRNA:   3'- -GGUUUGGg------------GGAGG-CCGGUUUCCCcuu -5'
3726 5' -58.3 NC_001650.1 + 551 0.66 0.85019
Target:  5'- -gAAGCCCCCUgUGcGCauGAGGGGGu -3'
miRNA:   3'- ggUUUGGGGGAgGC-CGguUUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 82414 0.66 0.85019
Target:  5'- gCCAAGCCCgCCaaCUGGC---AGGGGAc -3'
miRNA:   3'- -GGUUUGGG-GGa-GGCCGguuUCCCCUu -5'
3726 5' -58.3 NC_001650.1 + 59962 0.66 0.85019
Target:  5'- uUCAGGCCCCgCUCCagGGUCAGccgcAGGGcGGu -3'
miRNA:   3'- -GGUUUGGGG-GAGG--CCGGUU----UCCC-CUu -5'
3726 5' -58.3 NC_001650.1 + 166786 0.66 0.85019
Target:  5'- aCAAACCCCC-CCGa--AAAGGGGc- -3'
miRNA:   3'- gGUUUGGGGGaGGCcggUUUCCCCuu -5'
3726 5' -58.3 NC_001650.1 + 16862 0.66 0.85019
Target:  5'- ---cACCCgUCUCCGGgCAGaccucGGGGGAGa -3'
miRNA:   3'- gguuUGGG-GGAGGCCgGUU-----UCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 118643 0.66 0.85019
Target:  5'- cCCGAGCCgCCCUCCaccucggauacGGUCuugcgcagGGAGGGGu- -3'
miRNA:   3'- -GGUUUGG-GGGAGG-----------CCGG--------UUUCCCCuu -5'
3726 5' -58.3 NC_001650.1 + 61194 0.66 0.85019
Target:  5'- -gGGugCCCCUgaCCGGgCGAuguGGGGGGGu -3'
miRNA:   3'- ggUUugGGGGA--GGCCgGUU---UCCCCUU- -5'
3726 5' -58.3 NC_001650.1 + 131006 0.66 0.85019
Target:  5'- gCGGGCCCUCUaUUGGuCCAacagccAAGGGGAGa -3'
miRNA:   3'- gGUUUGGGGGA-GGCC-GGU------UUCCCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.