miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3861 5' -58.7 NC_001650.1 + 115075 0.66 0.848234
Target:  5'- aGGCgCUcgcGCCCCugagggccaagauaGCCGAgaaccuggucgccuUCCCACAGAc -3'
miRNA:   3'- aCCG-GA---UGGGG--------------CGGUU--------------AGGGUGUCUc -5'
3861 5' -58.7 NC_001650.1 + 93858 0.66 0.845112
Target:  5'- gGGCUggACCagGCUcuucguGUCCCACAGGGa -3'
miRNA:   3'- aCCGGa-UGGggCGGu-----UAGGGUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 133938 0.66 0.845112
Target:  5'- -cGUCUcCCCCGCCGccgCCCgcucccgggcGCAGAGa -3'
miRNA:   3'- acCGGAuGGGGCGGUua-GGG----------UGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 74727 0.66 0.845112
Target:  5'- cGGCCUugUCCGgCGA-CCC-CGGGu -3'
miRNA:   3'- aCCGGAugGGGCgGUUaGGGuGUCUc -5'
3861 5' -58.7 NC_001650.1 + 106391 0.66 0.845112
Target:  5'- aGGUUg--CCCGCCucgCCCAgGGAGg -3'
miRNA:   3'- aCCGGaugGGGCGGuuaGGGUgUCUC- -5'
3861 5' -58.7 NC_001650.1 + 81639 0.66 0.845112
Target:  5'- gGGCCagcucCCCCGUCAcgUUCGCGGGc -3'
miRNA:   3'- aCCGGau---GGGGCGGUuaGGGUGUCUc -5'
3861 5' -58.7 NC_001650.1 + 38820 0.66 0.845112
Target:  5'- gGGCUaccACCCCcacgcgGCCAucCCCAUGGAGa -3'
miRNA:   3'- aCCGGa--UGGGG------CGGUuaGGGUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 82101 0.66 0.837177
Target:  5'- gUGGCCU-UCCUGC---UCCUACGGGGc -3'
miRNA:   3'- -ACCGGAuGGGGCGguuAGGGUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 119836 0.66 0.837177
Target:  5'- cGGCgU-CCgCGCCcagCCCGCAGAc -3'
miRNA:   3'- aCCGgAuGGgGCGGuuaGGGUGUCUc -5'
3861 5' -58.7 NC_001650.1 + 81192 0.66 0.837177
Target:  5'- gGGCCacguaGCCCaCGUgGAUguucUCCACGGAGg -3'
miRNA:   3'- aCCGGa----UGGG-GCGgUUA----GGGUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 117042 0.66 0.837177
Target:  5'- cUGGCCgccGCCCUGCgGAUCugauCCuCGGGGc -3'
miRNA:   3'- -ACCGGa--UGGGGCGgUUAG----GGuGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 52318 0.66 0.829065
Target:  5'- cGcCCUGgCCCGCCcguccUCCUugGGAGg -3'
miRNA:   3'- aCcGGAUgGGGCGGuu---AGGGugUCUC- -5'
3861 5' -58.7 NC_001650.1 + 157427 0.66 0.829065
Target:  5'- -uGCCUGCCCUGgUcg-CCCACGGGc -3'
miRNA:   3'- acCGGAUGGGGCgGuuaGGGUGUCUc -5'
3861 5' -58.7 NC_001650.1 + 94734 0.66 0.829065
Target:  5'- cGGCCcacgcgaACCCCGCCucggcggCCCagcGCAGGa -3'
miRNA:   3'- aCCGGa------UGGGGCGGuua----GGG---UGUCUc -5'
3861 5' -58.7 NC_001650.1 + 141524 0.66 0.829065
Target:  5'- aUGGCCaACUuaGCU--UCCCACGGAc -3'
miRNA:   3'- -ACCGGaUGGggCGGuuAGGGUGUCUc -5'
3861 5' -58.7 NC_001650.1 + 99241 0.66 0.829065
Target:  5'- cGGCCUcgcCCCCGCCAucgCCCu----- -3'
miRNA:   3'- aCCGGAu--GGGGCGGUua-GGGugucuc -5'
3861 5' -58.7 NC_001650.1 + 162434 0.66 0.829065
Target:  5'- cGGCCggcgcccuCCCCGgCGuccCCCAcCAGGGg -3'
miRNA:   3'- aCCGGau------GGGGCgGUua-GGGU-GUCUC- -5'
3861 5' -58.7 NC_001650.1 + 166191 0.66 0.828245
Target:  5'- gUGaGCCcACCCCaccccgcGCCAccaCCACAGAGu -3'
miRNA:   3'- -AC-CGGaUGGGG-------CGGUuagGGUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 22566 0.66 0.820783
Target:  5'- aGGCCUGCCUguCGCCcGUCCgggGCGGcGg -3'
miRNA:   3'- aCCGGAUGGG--GCGGuUAGGg--UGUCuC- -5'
3861 5' -58.7 NC_001650.1 + 120813 0.66 0.820783
Target:  5'- aGGUCU-CCCUGCCcaagCCCAaccccCAGAGc -3'
miRNA:   3'- aCCGGAuGGGGCGGuua-GGGU-----GUCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.