Results 1 - 20 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3885 | 5' | -51.8 | NC_001650.1 | + | 64114 | 0.66 | 0.992834 |
Target: 5'- gGCACCUucagggcgucggAGCUggGCAgGGACCucaggGCUAUa -3' miRNA: 3'- -UGUGGA------------UCGAa-CGUgUCUGG-----UGAUGg -5' |
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3885 | 5' | -51.8 | NC_001650.1 | + | 110604 | 0.66 | 0.992834 |
Target: 5'- gGCGCuCUcggcguuguagGGCUcGCACgAGACCACgcacgagGCCc -3' miRNA: 3'- -UGUG-GA-----------UCGAaCGUG-UCUGGUGa------UGG- -5' |
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3885 | 5' | -51.8 | NC_001650.1 | + | 155133 | 0.66 | 0.992834 |
Target: 5'- gGCACCgucAGUU--CGCGGGCCGCgcCCa -3' miRNA: 3'- -UGUGGa--UCGAacGUGUCUGGUGauGG- -5' |
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3885 | 5' | -51.8 | NC_001650.1 | + | 80853 | 0.66 | 0.992834 |
Target: 5'- -aGCCUcaGGCUgggGCACGGAC-GCguugGCCc -3' miRNA: 3'- ugUGGA--UCGAa--CGUGUCUGgUGa---UGG- -5' |
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3885 | 5' | -51.8 | NC_001650.1 | + | 154240 | 0.66 | 0.992834 |
Target: 5'- aACACCU-GCgcGUACAcGGCCGCgagcucucggGCCa -3' miRNA: 3'- -UGUGGAuCGaaCGUGU-CUGGUGa---------UGG- -5' |
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3885 | 5' | -51.8 | NC_001650.1 | + | 54575 | 0.66 | 0.992834 |
Target: 5'- -gACCUGGCUuuUGgACccccGGCaCGCUACCc -3' miRNA: 3'- ugUGGAUCGA--ACgUGu---CUG-GUGAUGG- -5' |
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3885 | 5' | -51.8 | NC_001650.1 | + | 157054 | 0.66 | 0.992733 |
Target: 5'- uACACCUugggcAGCUUGUACuggucguGGAaggACUGCCu -3' miRNA: 3'- -UGUGGA-----UCGAACGUG-------UCUgg-UGAUGG- -5' |
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3885 | 5' | -51.8 | NC_001650.1 | + | 126702 | 0.66 | 0.991879 |
Target: 5'- gGCGCCUcAGCUguaucccgccccgcCACAGGCCuuCUAUCa -3' miRNA: 3'- -UGUGGA-UCGAac------------GUGUCUGGu-GAUGG- -5' |
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3885 | 5' | -51.8 | NC_001650.1 | + | 41497 | 0.66 | 0.991767 |
Target: 5'- gGCGCCUGGuCUcgGC-CGcGCCGCcGCCg -3' miRNA: 3'- -UGUGGAUC-GAa-CGuGUcUGGUGaUGG- -5' |
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3885 | 5' | -51.8 | NC_001650.1 | + | 108822 | 0.66 | 0.991767 |
Target: 5'- -aACCUGGCccGCgcgugggaGCGGGCCgugcaGCUGCCc -3' miRNA: 3'- ugUGGAUCGaaCG--------UGUCUGG-----UGAUGG- -5' |
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3885 | 5' | -51.8 | NC_001650.1 | + | 170493 | 0.66 | 0.991767 |
Target: 5'- -aACCUGuGUgUUGUGCaAGACCcACUACCa -3' miRNA: 3'- ugUGGAU-CG-AACGUG-UCUGG-UGAUGG- -5' |
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3885 | 5' | -51.8 | NC_001650.1 | + | 104084 | 0.66 | 0.991767 |
Target: 5'- cACAUCUGGCUUGaaCACGGGCgagauaGCggucgugGCCa -3' miRNA: 3'- -UGUGGAUCGAAC--GUGUCUGg-----UGa------UGG- -5' |
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3885 | 5' | -51.8 | NC_001650.1 | + | 3786 | 0.66 | 0.991767 |
Target: 5'- -aACCUGuGUgUUGUGCaAGACCcACUACCa -3' miRNA: 3'- ugUGGAU-CG-AACGUG-UCUGG-UGAUGG- -5' |
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3885 | 5' | -51.8 | NC_001650.1 | + | 109477 | 0.66 | 0.991767 |
Target: 5'- -gGCCUGGUcuaugUGCAgcgugUAGGCC-CUGCCc -3' miRNA: 3'- ugUGGAUCGa----ACGU-----GUCUGGuGAUGG- -5' |
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3885 | 5' | -51.8 | NC_001650.1 | + | 2521 | 0.66 | 0.990578 |
Target: 5'- -gGCCaaugaAGCgucGCGCGGGCCGCgcguUGCCa -3' miRNA: 3'- ugUGGa----UCGaa-CGUGUCUGGUG----AUGG- -5' |
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3885 | 5' | -51.8 | NC_001650.1 | + | 44804 | 0.66 | 0.990578 |
Target: 5'- -gGCCUAGCUUcCucuuuacCGGACCACUAg- -3' miRNA: 3'- ugUGGAUCGAAcGu------GUCUGGUGAUgg -5' |
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3885 | 5' | -51.8 | NC_001650.1 | + | 169228 | 0.66 | 0.990578 |
Target: 5'- -gGCCaaugaAGCgucGCGCGGGCCGCgcguUGCCa -3' miRNA: 3'- ugUGGa----UCGaa-CGUGUCUGGUG----AUGG- -5' |
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3885 | 5' | -51.8 | NC_001650.1 | + | 96890 | 0.66 | 0.990578 |
Target: 5'- -aACCUgggugGGCUcGCACAG-CCAggACCa -3' miRNA: 3'- ugUGGA-----UCGAaCGUGUCuGGUgaUGG- -5' |
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3885 | 5' | -51.8 | NC_001650.1 | + | 122844 | 0.66 | 0.990578 |
Target: 5'- gACGCCUucauagagAGCcUGCAgCAGcCCAUcGCCa -3' miRNA: 3'- -UGUGGA--------UCGaACGU-GUCuGGUGaUGG- -5' |
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3885 | 5' | -51.8 | NC_001650.1 | + | 51515 | 0.66 | 0.989258 |
Target: 5'- uCGCCgAGCUgGCcCAG-CCACUgGCCa -3' miRNA: 3'- uGUGGaUCGAaCGuGUCuGGUGA-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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