miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3978 5' -56.6 NC_001650.1 + 134883 0.66 0.912379
Target:  5'- cGUgCCACaGAGCUCCUUgACCAggcuACcgCa -3'
miRNA:   3'- aCGgGGUG-CUCGAGGAG-UGGU----UGuaG- -5'
3978 5' -56.6 NC_001650.1 + 161272 0.66 0.912379
Target:  5'- gGUUCCugGGGgUgUUCACCAcCGUCa -3'
miRNA:   3'- aCGGGGugCUCgAgGAGUGGUuGUAG- -5'
3978 5' -56.6 NC_001650.1 + 99307 0.66 0.912379
Target:  5'- cGCCCCuag----CCUUACCGGCGUCu -3'
miRNA:   3'- aCGGGGugcucgaGGAGUGGUUGUAG- -5'
3978 5' -56.6 NC_001650.1 + 48747 0.66 0.912379
Target:  5'- cGCCuCCACGGGCaggauuuacugcUCCUUuugcgggagcuGCC-GCAUCa -3'
miRNA:   3'- aCGG-GGUGCUCG------------AGGAG-----------UGGuUGUAG- -5'
3978 5' -56.6 NC_001650.1 + 88022 0.66 0.912379
Target:  5'- uUGCCCgGauGGCUCuCUCGCCG--GUCa -3'
miRNA:   3'- -ACGGGgUgcUCGAG-GAGUGGUugUAG- -5'
3978 5' -56.6 NC_001650.1 + 35516 0.66 0.912379
Target:  5'- gUGCCCgAgGGGCUCaagcuggacuuuCUCAuCCAGCAg- -3'
miRNA:   3'- -ACGGGgUgCUCGAG------------GAGU-GGUUGUag -5'
3978 5' -56.6 NC_001650.1 + 40454 0.66 0.912379
Target:  5'- gGCCUuCuuGAgGCUCCUCACCGAgGa- -3'
miRNA:   3'- aCGGG-GugCU-CGAGGAGUGGUUgUag -5'
3978 5' -56.6 NC_001650.1 + 175298 0.66 0.906367
Target:  5'- gGCCCCAUGGGaCUCC-C-CCGugGc- -3'
miRNA:   3'- aCGGGGUGCUC-GAGGaGuGGUugUag -5'
3978 5' -56.6 NC_001650.1 + 37981 0.66 0.906367
Target:  5'- -cCCCCGCGAGCg----GCCAugGUCa -3'
miRNA:   3'- acGGGGUGCUCGaggagUGGUugUAG- -5'
3978 5' -56.6 NC_001650.1 + 50266 0.66 0.906367
Target:  5'- aUGCUCCGCGGGCacugcggccgCCU-GCCGGgGUCu -3'
miRNA:   3'- -ACGGGGUGCUCGa---------GGAgUGGUUgUAG- -5'
3978 5' -56.6 NC_001650.1 + 75037 0.66 0.906367
Target:  5'- cGCCCCGCGuacGGCUCgUC-CCA-C-UCg -3'
miRNA:   3'- aCGGGGUGC---UCGAGgAGuGGUuGuAG- -5'
3978 5' -56.6 NC_001650.1 + 8591 0.66 0.906367
Target:  5'- gGCCCCAUGGGaCUCC-C-CCGugGc- -3'
miRNA:   3'- aCGGGGUGCUC-GAGGaGuGGUugUag -5'
3978 5' -56.6 NC_001650.1 + 71578 0.66 0.900124
Target:  5'- cGgCgCACGAGCUCCUCAaacUgGAgGUCc -3'
miRNA:   3'- aCgGgGUGCUCGAGGAGU---GgUUgUAG- -5'
3978 5' -56.6 NC_001650.1 + 27795 0.66 0.900124
Target:  5'- cUGUgCCGCG-GCUCCUgcccgGCCAgcuGCGUCa -3'
miRNA:   3'- -ACGgGGUGCuCGAGGAg----UGGU---UGUAG- -5'
3978 5' -56.6 NC_001650.1 + 142128 0.66 0.900124
Target:  5'- gGCUCCugGAGCacUCCUU-CCAGCc-- -3'
miRNA:   3'- aCGGGGugCUCG--AGGAGuGGUUGuag -5'
3978 5' -56.6 NC_001650.1 + 50883 0.66 0.900124
Target:  5'- cGCCCCGCuucGAGCggggggCUUCugCAAgGUg -3'
miRNA:   3'- aCGGGGUG---CUCGa-----GGAGugGUUgUAg -5'
3978 5' -56.6 NC_001650.1 + 99247 0.66 0.898847
Target:  5'- cGCCCC-CGccaucgcccucCUCCUCACCuucgccgugGACAUCg -3'
miRNA:   3'- aCGGGGuGCuc---------GAGGAGUGG---------UUGUAG- -5'
3978 5' -56.6 NC_001650.1 + 111075 0.66 0.89365
Target:  5'- -aCCCCAgGGGCUCCagcggCGCCAggcGCGa- -3'
miRNA:   3'- acGGGGUgCUCGAGGa----GUGGU---UGUag -5'
3978 5' -56.6 NC_001650.1 + 122937 0.66 0.89365
Target:  5'- cG-CCCACGGGgUCCUgGCgGACcUCg -3'
miRNA:   3'- aCgGGGUGCUCgAGGAgUGgUUGuAG- -5'
3978 5' -56.6 NC_001650.1 + 74039 0.66 0.89365
Target:  5'- cGCCCC-CGuGCaCUUCaACCAGCAccUCa -3'
miRNA:   3'- aCGGGGuGCuCGaGGAG-UGGUUGU--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.